PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr5g041570.1 | ||||||||
Common Name | MTR_5g041570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 439aa MW: 50303.3 Da PI: 6.1672 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 134 | 179 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Medtr5g041570.1 134 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 179 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.7e-18 | 186 | 229 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Medtr5g041570.1 186 RRAFTEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 229 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.938 | 129 | 180 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 133 | 182 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.74E-28 | 133 | 227 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-16 | 134 | 179 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-26 | 135 | 187 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.35E-12 | 137 | 178 | No hit | No description |
PROSITE profile | PS51294 | 27.372 | 181 | 235 | IPR017930 | Myb domain |
SMART | SM00717 | 8.9E-15 | 185 | 233 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 186 | 228 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-21 | 188 | 234 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.99E-11 | 188 | 228 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 439 aa Download sequence Send to blast |
MISSQENQSL SSSSSFSFPN SSMHMVYADL GSLSINTNYG VVSSLDKESK NSYAFKSFVM 60 ENGSVFPFMS ECLSKRYEEH NMDDDMEGKG SYWSEEGENS ERINHNNTNF NDELENPNGS 120 GKEEDNGQSS KCARGHWRPA EDSKLKELVA LYGPQNWNLI AEKLEGRSGK SCRLRWFNQL 180 DPRINRRAFT EEEEERLMQA HRIYGNKWAM IARLFPGRTD NAVKNHWHVI MARKYREQSN 240 AYRRRRLSQN VYSRMEQNPS FGRRDTATME TESSPPYFLN GAPLGNSMSI FQYATSFQHC 300 AHGGRVEYGL NVLPHMSGER EAMQGPLHVG LYAQQAPFDY FSVGRSNDMV EEPFNQIRYW 360 DGTKDEYQQL NGFYHHYPQQ YLMTKQNQNN HNFHIFSNSS AASATHHNAE NSEKVLVDDT 420 PDAVETPQFF DFLGVGAT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-33 | 134 | 234 | 7 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 241 | 246 | YRRRRL |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr5g041570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT025840 | 0.0 | CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613837.1 | 0.0 | transcription factor MYB105 | ||||
Swissprot | Q9SEZ4 | 1e-78 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | G7KGM9 | 0.0 | G7KGM9_MEDTR; Myb transcription factor | ||||
STRING | AES96795 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-80 | myb domain protein 105 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr5g041570.1 |
Entrez Gene | 11418065 |
Publications ? help Back to Top | |||
---|---|---|---|
|