PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g037250.1 | ||||||||
Common Name | MTR_5g037250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 26558.4 Da PI: 7.1279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.6e-10 | 122 | 168 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++YI+sL Medtr5g037250.1 122 SHSLAERARREKISERMKTLQDLVPGC----NKVIGKALVLDEIINYIQSL 168 8*************************9....677***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 7.23E-10 | 116 | 173 | No hit | No description |
SuperFamily | SSF47459 | 9.16E-18 | 116 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-18 | 118 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.082 | 118 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-8 | 122 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-10 | 124 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDPAYHLPEI WQSRPPHLAP GYPDFSIQDL TSEQKPLNHA RKITRVTNED SVQCVSTTNG 60 GARGNSNAVN DDGGDGKRSK TSGNSKGEEN SSGKHAEETS DEPHPKKDYI HVRARRGQAT 120 DSHSLAERAR REKISERMKT LQDLVPGCNK VIGKALVLDE IINYIQSLHH QVEFLSMKLE 180 AVNSRPTPGM EVFPPKTFDQ QTFDTTAIPF ASHATREYSR GASPEWLHMQ LGGGFERTS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.25395 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g037250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146684 | 0.0 | BT146684.1 Medicago truncatula clone JCVI-FLMt-9L20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613488.1 | 0.0 | transcription factor BHLH089 | ||||
Swissprot | Q69WS3 | 1e-66 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | G7K714 | 1e-180 | G7K714_MEDTR; Putative transcription factor bHLH family | ||||
STRING | AES96446 | 1e-180 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 2e-82 | BIG PETAL P |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g037250.1 |
Entrez Gene | 11408849 |
Publications ? help Back to Top | |||
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