PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g032820.1 | ||||||||
Common Name | MTR_5g032820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 363aa MW: 40096 Da PI: 7.3108 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.6e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Medtr5g032820.1 45 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 94 69*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.115 | 45 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-32 | 45 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.77E-30 | 45 | 101 | No hit | No description |
Pfam | PF00847 | 3.0E-11 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-29 | 45 | 101 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-21 | 45 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-9 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEEALNRLNG TTPPTIQEPD TKKSTNKRTS RDNTASAAGG GGALRYRGVR RRPWGRYAAE 60 IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGLKARTN FVYPTSPPPN TTFPSFNFPK 120 HSQAFEKTST NNRHVASCGW SEPHGVDFTH QRNPSTSSLD MLLFREFINS SNSNSSSAHN 180 HFHDNFPYSY NKSSTSSGSG FVAGCCMANS CGGGANSNHQ NTGVDGNNGS KISTDEDFEF 240 FPKESSDSGL LEEIVNRFLP KPKQEIKTEI LPKTTFCDTF VPNAPVFDHT LGKSVTKNEF 300 SGVGFDQNGF NMQQFENFHN GYNGSFQSLP LGNEQIMVNH TENSVIQYQE LLNAFALRMQ 360 NA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 45 | 101 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g032820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC119414 | 0.0 | AC119414.51 Medicago truncatula clone mth2-23d7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613106.1 | 0.0 | ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | G7JXS9 | 0.0 | G7JXS9_MEDTR; AP2 domain class transcription factor | ||||
STRING | AES96064 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 4e-13 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g032820.1 |
Entrez Gene | 11405834 |
Publications ? help Back to Top | |||
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