PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g014560.1
Common NameMTR_5g014560
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 308aa    MW: 34716.4 Da    PI: 6.0532
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g014560.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.66.3e-10134177755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++Er+RR+++ +++ +L  l+P +     kK++Ka++   A++++k+Lq
  Medtr5g014560.1 134 MAERKRREKLSQCLITLAALIPGL-----KKMDKASVIGDAIKHVKELQ 177
                      89**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.833127176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-15132191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.88E-10132181No hitNo description
Gene3DG3DSA:4.10.280.109.8E-13132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-12133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7134177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.10004.2E-4243287IPR023214HAD-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEKLNTSSNA SSTSWLSHFL FEENEIEGCD LFQQCEQNLF GEEELISHDI ASIFQQEENL  60
QQQPLLLFES YSSCTLETNL ERDNKKLKTN NTLHEVVPVS QTQLPQNQNI VETKNTQGQG  120
TKRSVAHDHQ DRIMAERKRR EKLSQCLITL AALIPGLKKM DKASVIGDAI KHVKELQERL  180
RVLEEQNKNS PIEFVVTLNK PKLNYESWSD DGSKAASANN ETLPHVEAKI LGKDVLIRIQ  240
CQKQKSFLLN ILVEIQQLHL FVVNNNVLAV GDSIHDITII AQMGTGYNLT KNDLVKSVQA  300
AVLRSMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135140ERKRRE
2136141RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g014560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9329630.0CR932963.2 Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611496.10.0transcription factor bHLH18
TrEMBLG7K1280.0G7K128_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES944540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-41bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]