PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g012630.1 | ||||||||
Common Name | MTR_5g012630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 30143.3 Da PI: 9.763 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+++F + L H++ H Medtr5g012630.1 4 YKCKLCSRTFINGKALGGHMKAH 26 9*******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.5E-7 | 3 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.16E-9 | 3 | 26 | No hit | No description |
SMART | SM00355 | 0.025 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.16E-9 | 213 | 240 | No hit | No description |
Pfam | PF13912 | 1.2E-8 | 218 | 240 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.059 | 218 | 240 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.078 | 218 | 240 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 220 | 240 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MERYKCKLCS RTFINGKALG GHMKAHFATL RLSLPNPQPQ TQPHHTPTNL FSFFSSSENE 60 QNQQTVEQRD SNEKSLMYRL RENPKKSFKL SDPKFYFSTT ETIVHDRESE TESKNPTQKR 120 KLTFGQNSVQ KKLKQTLTNS HSPLTEAEPE PVTSLFNFSP EEEAAITLMM LSRDKWKINV 180 AVKEEEQEVC GKYKSHKSIC LQNETNLALT SSSDHKIFQC VFCPKVFGSY QALGGHKKSH 240 LYPSWKKKKK LCFFDLNLPP SS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 133 | KRKLTFGQNSVQKKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g012630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137077 | 0.0 | AC137077.26 Medicago truncatula clone mth2-8g15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004299433.1 | 1e-61 | PREDICTED: zinc finger protein ZAT4 | ||||
Refseq | XP_027361848.1 | 6e-62 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A396HK84 | 0.0 | A0A396HK84_MEDTR; Putative transcription factor C2H2 family | ||||
STRING | AES94268 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-22 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g012630.1 |
Entrez Gene | 11430132 |
Publications ? help Back to Top | |||
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