PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g121020.1 | ||||||||
Common Name | MTR_4g121020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 682aa MW: 74269.1 Da PI: 6.0175 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 91.9 | 5.3e-29 | 215 | 268 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Medtr4g121020.1 215 KPRVVWSVELHQQFVDAVDQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 268 79*******************.********************************8 PP | |||||||
2 | Response_reg | 76.3 | 1.2e-25 | 37 | 145 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl+vdD+p+ +++l+++l+ y ev+ + +e al ll+e++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a + ++ + + + Medtr4g121020.1 37 VLVVDDDPTCLMILEKMLRTCLY-EVTKCNRAETALSLLRENKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKSVVMKGVTH 128 89*********************.***************999999**********************6654.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ +e+l + Medtr4g121020.1 129 GACDYLIKPVRIEALKN 145 *************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 3.0E-180 | 15 | 673 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 3.5E-42 | 34 | 169 | No hit | No description |
SuperFamily | SSF52172 | 3.42E-35 | 34 | 156 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.8E-30 | 35 | 147 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.514 | 36 | 151 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.4E-23 | 37 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.48E-27 | 38 | 150 | No hit | No description |
PROSITE profile | PS51294 | 11.502 | 212 | 271 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.3E-20 | 212 | 272 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-30 | 214 | 273 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.8E-25 | 215 | 268 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-8 | 217 | 267 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 682 aa Download sequence Send to blast |
MMNLSNNGKG SISTVTSTAT TMKSGEGSDQ FPAGLRVLVV DDDPTCLMIL EKMLRTCLYE 60 VTKCNRAETA LSLLRENKNG FDIVISDVHM PDMDGFKLLE HIGLEMDLPV IMMSADDGKS 120 VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKKKNEWKD TEQSGSADEG DRHPKASDDA 180 DYSSSANEGN WRNSRKRRDD EEEGDDRDDS STLKKPRVVW SVELHQQFVD AVDQLGIDKA 240 VPKKILELMN VPGLTRENVA SHLQKYRLYL RRLSGVSQHQ NNSFLSPQEA SFGTISSMNG 300 LDLQTLAAAG QLPAQSLATL QAAGLGRSTV KSGLPMPLMD QRNLFSFENP RLRFGEGQQQ 360 LLNGSNNKPT NLLHGVPTNM EPKQLANLHQ SAAQSLGNMN MRVPASATQG NPLLMQMAQS 420 QPRGPMLSEN TGSHVPRLPN LLGQSTVSNG ISDGLMGRNN MASSSRAPSF NPVPQSSSFL 480 NFPMNQSTEM SVSNFPLGST PGISSITTKG SFQAEVNSGI KGSAGFPSYD IFNELNHQKS 540 RDWGMTNQGL MYDSSSHANP LHGNIDVSPS VLVHQGFSSA QQTGHSRDAS LLGKSPFSLG 600 EGLEQGNLQN GGGQHFNPLY VENLTRVKAE RVPDASSHTD LFPDHFGQDD LMSALLKQQE 660 GIGQGENEFD FDGYSLDNIP V* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-22 | 214 | 274 | 4 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.9046 | 0.0 | flower| glandular trichome| leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g121020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458294.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | A0A072V2J3 | 0.0 | A0A072V2J3_MEDTR; Two-component response regulator | ||||
STRING | GLYMA07G37220.1 | 0.0 | (Glycine max) | ||||
STRING | GLYMA17G03380.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g121020.1 |
Entrez Gene | 25494105 |