PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g119390.2
Common NameMTR_4g119390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 1199aa    MW: 133638 Da    PI: 9.7867
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g119390.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-085590340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++ E e++++a +++G++ Wk++a  +  +Rt +++
  Medtr4g119390.2 55 QWSKAELERFYEAYREYGKD-WKKVALAVR-NRTMEMV 90
                     6*****************99.*********.***9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.89E-95299IPR009057Homeodomain-like
SMARTSM007172.8E-452100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-45591IPR009057Homeodomain-like
PfamPF002494.1E-75591IPR001005SANT/Myb domain
CDDcd001674.29E-656100No hitNo description
SMARTSM011351.2E-52666767IPR033471DIRP domain
PfamPF065847.9E-32666766IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1199 aa     Download sequence    Send to blast
MGPTRKSRSV NKRFSNIREA AASKDKDAAN TGRNRQKACP GIQKKRKLAD MLGPQWSKAE  60
LERFYEAYRE YGKDWKKVAL AVRNRTMEMV EALYTKNRAY LSLPEGTASV VGLIAMMTDH  120
YSILGGSDSG KESNEDSEIM KKSKKRPRGK PNDNKAVDGH FSDHSQPHSV ASDDGCLSLL  180
KKRHSGIRPH AVRKRTPRVP ISYSIGKDNE GKFFSSARQD SKQMIDTTDV THKIALALSE  240
ASQRGGSSKK VGSPNKKNMP SPNLKSGKKH VKSGIVGAKF RKSDMDEASS ELSLGSTEGD  300
NGDYSGKLIH RNSRENTGRV RNQEKGIKHY RKSLEPQKNT NKHLNDIKEA SSGTDDGKNQ  360
SSFKSNFDTD FANAKSVRSS YKGPRKKSKK QHFEEDEGSA FDALKTLADL SLMMPETNPD  420
TVFHLTFWCL SYKGGNCAPI FTSSDSNTLI ISFQQFESFV QFNEGNLDES KMETDNGNSS  480
RKSGKVFSDK GDAAPKAEGA YQLSAGSRKR KQKSLTLNND ETHTGSPLSG SQKIKVTDEV  540
KKSTVKGKRS SVSTAHSRNL NMVKSLGNMS SNIVDKAERG DSSFSPIIFL STNQVGQANR  600
VRPRRKMEKP KPMVQQDHTM SENNFSGQHD KSIALYWRNS MERHKGMLIN CLSSHQTRRW  660
CISEWFYSAI DYPWFSKREF VEYLEHVGLG HVPRLTRIEW GVIRSSLGRP RRFSEQFLTE  720
EKHKLNQYRE SVRSHYAEVL AGTKEGLPAD LAQPLIVGQR VIAIHPKTRE IHDGSILTVD  780
HCRYRVQFDQ HELGVEFVMD IDCMPLYPSE NMPMSLIRHH ITPARMNENL RDLTHNGKLT  840
ERKISEHTML SPTEKSDAIK GRCVPSAMHG FSSSCKSQAK VAGSEICNGQ SASSSHSSFL  900
EQLQSKEADI LAISELTRAL EKKELVLSEL KHMNDGVSES QKYGENSVKD SEPFKRNYAS  960
VLKQLTEANE QVSSSLFCLR QRNAYQASSS VLSLKPIANL EDPGGHASSS NCSACHNQES  1020
ISQSHIAEIV ESSRRKARTM VVQATQAMSV FRKTESKVER VEDVINFINN RLSVDDSTAS  1080
ATNFLAIDSI TLASRDQLTA SSTLNILARC PVQDDELNSS SDQNEMKIPS ELISHCLATL  1140
LMIQKCTERQ FPPADVAQVL DSAVTSLQPF CSKNLPIYGE IQKCMGIIRN QILALIPT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1506511SRKRKQ
2601605RPRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.204200.0glandular trichome| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g119390.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465520.0AC146552.16 Medicago truncatula chromosome 8 clone mth2-9d1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458246.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A072URG20.0A0A072URG2_MEDTR; Always EARLY-like protein
STRINGXP_004508286.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]