PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g095600.1 | ||||||||
Common Name | MTR_4g095600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25403 Da PI: 7.6662 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.8 | 2.6e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q Medtr4g095600.1 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6********************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Medtr4g095600.1 96 AAVETVLR 103 **998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.892 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPL PELTLLDAPL 120 TATDEASEAE DGGADAMWKI REPNFGLASS RSSNKVCSGS KRRRSEEFVK VPAAINLDLR 180 LTPIFQQKAV EERRHGSPSM TSEESVTTTA CLETGIGDRW SHGGDRKVLN LFI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.7964 | 0.0 | glandular trichome| leaf| root| seed| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g095600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137703 | 0.0 | AC137703.43 Medicago truncatula chromosome 8 clone mth2-11d24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003608484.1 | 1e-172 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 1e-82 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | G7JDY0 | 1e-171 | G7JDY0_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | AES90681 | 1e-171 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 8e-77 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g095600.1 |
Entrez Gene | 11407764 |
Publications ? help Back to Top | |||
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