PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g085700.1
Common NameMTR_4g085700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 306aa    MW: 34113.6 Da    PI: 7.3258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g085700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-1292139455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   Er RR+++++ f+ L  llP++   p  K +K++i+  Av++Ik+L+
  Medtr4g085700.1  92 MHILTERERRKKMRNMFDSLHALLPEL---P-SKADKSTIVDAAVKHIKNLE 139
                      79999*********************6...3.8****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.82788138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1591164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-1591156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-1191138No hitNo description
PfamPF000101.1E-992139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-994144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAKSVDHDQG VQTGFIWENH LWGDLPNSDH NLGESSKKRV DTKPLNQNEG INEAEAPVSK  60
KRNWGGVVIR SENNITTGEE KDKKYRDFDH EMHILTERER RKKMRNMFDS LHALLPELPS  120
KADKSTIVDA AVKHIKNLEE IKEKLEKKKQ EMLKSVSPLG SESSVINSQW HPYESREAFL  180
ADQGSSSYNN NLSNAIVTSN PSNAFSISPP QQVGFQTWSS QNVVLNICGG EAQFCICSTK  240
KPGLLTTIAL VLEKHKIDVI SANIMCNANG NFYMIMAHAK QASLGANSME ETYKQAALEI  300
MTRIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g085700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1485280.0AC148528.15 Medicago truncatula clone mth2-53h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607938.10.0transcription factor bHLH95
TrEMBLG7JK250.0G7JK25_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES901350.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]