PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g085660.1
Common NameMTR_4g085660
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 305aa    MW: 34099.7 Da    PI: 7.6864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g085660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-1191138455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h   Er RR+++++ f+ L  llP++   p  K +K++i+  A+++Ik+L+
  Medtr4g085660.1  91 MHILTERERRKKMRNMFDSLHALLPEL---P-SKADKSTIVDAAMKHIKNLE 138
                      79999*********************6...3.8****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.49187137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1490163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1490155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-1190137No hitNo description
PfamPF000105.5E-991138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-893143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAMSVDHDQG VQTGFIWENH PWGVLPISDN LGESSKKRID TKPLNQKEGI NEGDAPVRKK  60
RSRGGVVIRS ENNITTDEGE DRKYRDFDHE MHILTERERR KKMRNMFDSL HALLPELPSK  120
ADKSTIVDAA MKHIKNLEEI KEKLEKKKQE MLKSVSPLGS ESSVINSQWH PYESREAFLA  180
DQGSSSYNNN LSNAIVTSNP SNAFSISPPQ QVGFQTWSSQ NVVLNICGGE AQFCICSTKK  240
PGLLTTIALV LEKHKIDVIS ANIMCNANGN FYMIMAHAKQ ASHDANSMKE TYKHAAGEIM  300
MWIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g085660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1485280.0AC148528.15 Medicago truncatula clone mth2-53h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607934.10.0transcription factor bHLH95
TrEMBLG7JK210.0G7JK21_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES901310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.15e-33bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]