PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g065870.1
Common NameMTR_4g065870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 434aa    MW: 47463.5 Da    PI: 6.4411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g065870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.61.9e-12367412655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR +i +++ +L++l+P+     +k  + +++L +AveYIk+Lq
  Medtr4g065870.1 367 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVEYIKDLQ 412
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-16364424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-12365416No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15366423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9367412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MESDLQQHPT MFLDHQNHHH QQQMNSGLTR FKSAPSSYFS NIIDKEFYEH LFNRPSSPET  60
ERVFARFMNS LSGSGGSGGG GGGDAESVSV TASIAPITDS VVDSLTQQLP IVKEEIDQQS  120
QTMQTMNNNN NNNNNEAVDL PQLQRQQSNN MSNYGSSAAP QSFYHNSGRP PLPNQMKTGR  180
SNLIRHGSSP AGLFSNINID TGFAAMRGIG TMGAANSTSK EANFSSSVVR LKNAPNYASA  240
LGAEIGSNSI PQNNLEPEGF AETRGNDFIP GFPLGTTWED TAMISDNITG LKRYRDDDDV  300
KPFPPGLNPA ETKNETGGQT TSAPLAHQMS MPNTTAELAA IEKFLQFSDS VPCKIRAKRG  360
CATHPRSIAE RVRRTKISER MRKLQDLVPN MDKQTNTSDM LDLAVEYIKD LQNQVETLSD  420
NRAKCTCSHK QQQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.111020.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g065870.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311181e-120KT031118.1 Glycine max clone HN_CCL_179 bHLH transcription factor (Glyma11g13960.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456221.10.0transcription factor bHLH122
TrEMBLA0A072UKL10.0A0A072UKL1_MEDTR; Putative transcription factor bHLH family
STRINGAES627160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.13e-62bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]