PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g057230.1 | ||||||||
Common Name | MTR_4g057230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 294aa MW: 32129.2 Da PI: 6.8419 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00066 | 113 | 135 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Medtr4g057230.1 113 YECKTCNRTFPSFQALGGHRASH 135 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 208 | 230 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Medtr4g057230.1 208 HECSICGSEFTSGQALGGHMRRH 230 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.52E-9 | 112 | 135 | No hit | No description |
Pfam | PF13912 | 5.4E-13 | 113 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.052 | 113 | 135 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.408 | 113 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 115 | 135 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.52E-9 | 203 | 230 | No hit | No description |
PROSITE profile | PS50157 | 9.743 | 208 | 230 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.0E-11 | 208 | 231 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 208 | 230 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 210 | 230 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MEEFVMEEKM VGFSKKDATY IAKGKRTKRL RFLSPCGVVA MASSCSSDES NIDLEDEDED 60 DEEEDLAKCL ILLAQGGNHR EDGGVVDENK RVKGSHGNKK IGETSTKLGL YIYECKTCNR 120 TFPSFQALGG HRASHKKPKI MAEEKKPPSP PSQQPRPQSS SHDSQSDNLV ANSDEYEEAE 180 KPRGPMVSFQ MGNHGLKAAI NGNKAKIHEC SICGSEFTSG QALGGHMRRH RVSVANAAAV 240 AAPDERVRPR NILQLDLNLP APEEDIRESK FQFPATQKSM VMAAAPALVG CHY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.1052 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g057230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126007 | 0.0 | AC126007.16 Medicago truncatula clone mth2-11o4, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606327.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | G7JN94 | 0.0 | G7JN94_MEDTR; C2H2-type zinc finger protein, putative | ||||
STRING | AES88524 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF586 | 34 | 141 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 3e-41 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g057230.1 |
Entrez Gene | 11439390 |
Publications ? help Back to Top | |||
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