PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g053250.1
Common NameMTR_4g053250
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 490aa    MW: 53998.8 Da    PI: 7.4773
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g053250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1322.7e-10189229545
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      k  rr+++NReAA++sR+RKka++++Le     L++  ++L
  Medtr4g053250.1 189 KTLRRLAQNREAAKKSRLRKKAYVQQLESSRLRLSSLEQDL 229
                      6789************************9877777766666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-6185247IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.082187231IPR004827Basic-leucine zipper domain
PfamPF001701.1E-7189229IPR004827Basic-leucine zipper domain
CDDcd147089.06E-21189240No hitNo description
SuperFamilySSF579591.55E-6189231No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-7190233No hitNo description
PROSITE patternPS000360192207IPR004827Basic-leucine zipper domain
PfamPF141448.5E-28267342IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASQRIGEIG LSESGPSSQH VPYGVLHGIT TSTSPLMNQG SAFNFGELEE AIVLQGIKIR  60
NDEGKASALF TSKPAATLEM FPSWPIRFQQ TPRVVASLTS PSLTIPYGGS KSGGESTDSG  120
STELQFETNS PISVKASSSD HHNHAFQQET ATDDGLRTGT STQNQSKAKS PQQKKKGAVS  180
TSEKTLDPKT LRRLAQNREA AKKSRLRKKA YVQQLESSRL RLSSLEQDLQ RARSQGLFLG  240
CGGGNISPGA AMFDMEYARW LEEDQRHMAE LRAGLQASLG DNELRVIVDG YLYHYDELFR  300
LKEVAVKSDV FHLIKGIWAS PAERPFIWIG GFRPSELITM LTQQLEPLAQ QQIDGIVDLN  360
TSSFQAEEAL SKGHEQLHNA LVHTIAGGPV IDGMQQMVAA MGRISNLEKF VHEADNLRQQ  420
TLHQLCRILT VRQAARCFIV IGEYYGRLRA LSSLWASRPR ENMINDDNSC QATTELQMVQ  480
PSHSHFSSF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.104400.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During anther development, accumulates in anther primordia during archesporial cell specification and later present in a horseshoe pattern associated with the lateral and adaxial portion of primordia, prior to the emergence of distinct locules. Expressed throughout sporogenic tissue and surrounding cells layers in adaxial and adaxial locules. Localized to the tapetum and middle layers, gradually fading postmeiosis with degeneration of these cell layers. {ECO:0000269|PubMed:20805327}.
UniprotTISSUE SPECIFICITY: Mostly expressed in stems, inflorescence apex and flowers, and, to a lower extent, in seedlings, leaves and siliques. {ECO:0000269|PubMed:20805327}.
Functional Description ? help Back to Top
Source Description
UniProtTogether with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g053250.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606112.10.0transcription factor TGA9
RefseqXP_024637666.10.0transcription factor TGA9
SwissprotQ93XM60.0TGA9_ARATH; Transcription factor TGA9
TrEMBLG7JIE00.0G7JIE0_MEDTR; BZIP family transcription factor
STRINGAES883090.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45553357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.31e-172bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  3. Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S
    Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22.
    Plant Sci., 2016. 252: p. 12-21
    [PMID:27717447]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]