PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr4g033295.3 | ||||||||
Common Name | MTR_4g033295 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 186aa MW: 20702.3 Da PI: 5.6556 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 19.9 | 1.4e-06 | 130 | 153 | 6 | 29 |
HHHHHHHHHHHHHHHHHHHCTSCC CS HLH 6 nerErrRRdriNsafeeLrellPk 29 +++Er RR ri +++ +L+el+P+ Medtr4g033295.3 130 SIAERVRRTRISDRIRKLQELVPN 153 689********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.93E-6 | 126 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.18E-4 | 128 | 156 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.3E-5 | 129 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MQPVSGGGGG GLTRFNSTPA SWLESFILKE EDEVDERQQD HSLSFTQLLS NNNVAAGPGP 60 GPSTPESHPY LSDYYSSPLT PTSANVANNP FTQGVEDSGI AIDLKMDKIL EDSVPCKIRA 120 KRGFATHPRS IAERVRRTRI SDRIRKLQEL VPNMDKVLLF ILKHYNLFVF MFFDYQTNDL 180 VQDII* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.16673 | 0.0 | flower| root| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr4g033295.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147050 | 0.0 | BT147050.1 Medicago truncatula clone JCVI-FLMt-21K14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013455273.1 | 1e-113 | transcription factor bHLH80 | ||||
TrEMBL | A0A072UJN7 | 1e-135 | A0A072UJN7_MEDTR; Transcription factor | ||||
STRING | XP_008459678.1 | 2e-35 | (Cucumis melo) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 6e-20 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr4g033295.3 |
Entrez Gene | 25491795 |
Publications ? help Back to Top | |||
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