PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g467120.1

Common Name

MTR_3g467120

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bZIP

Protein Properties

Length: 378aa MW: 40814.9 Da PI: 6.087

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g467120.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	179	234	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l ++ l Medtr3g467120.1 179 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLYQRDTNGLS 234 9*****************************************99988877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.8E-16	175	239	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.818	177	240	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.48E-10	179	230	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.3E-10	179	233	No hit	No description
Pfam	PF00170	7.5E-9	179	236	IPR004827	Basic-leucine zipper domain
CDD	cd14703	2.33E-24	180	229	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MATQMQDPNA PSSNVFIRGS VNGVSTTATV AGEPHSHHRR AHSEINYRLP DDIMDLSPSD 60 PLTGGGSSTA SLDEIGSEDD LFFTYIDVEK LGGVTNGSNT NQTGYGNCAG AGAGAGSGTS 120 GNNDGEKSGN DATTPRTRHR HSCSVDGSTS TTNMFGEIMD AKKAMPPDKL AELWTIDPKR 180 AKRILANRQS AARSKERKAR YIQELERKVQ TLQTEATTLS AQLTLYQRDT NGLSTENTEL 240 KLRLQSMEQQ AHLRDALNDA LMKEVDRLKI ATGEAMNPSE SYNMGMHQLQ FAGSNFFSMP 300 QHSGPSGHQN IQFPQFGHSP SDMPNYQLQQ TNSHQISDML QNDQLGRLQG LDISSKGSTL 360 VKSEAPSISA SESSTTF*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MATQMQDPNA PSSNVFIRGS VNGVSTTATV AGEPHSHHRR AHSEINYRLP DDIMDLSPSD  60
PLTGGGSSTA SLDEIGSEDD LFFTYIDVEK LGGVTNGSNT NQTGYGNCAG AGAGAGSGTS  120
GNNDGEKSGN DATTPRTRHR HSCSVDGSTS TTNMFGEIMD AKKAMPPDKL AELWTIDPKR  180
AKRILANRQS AARSKERKAR YIQELERKVQ TLQTEATTLS AQLTLYQRDT NGLSTENTEL  240
KLRLQSMEQQ AHLRDALNDA LMKEVDRLKI ATGEAMNPSE SYNMGMHQLQ FAGSNFFSMP  300
QHSGPSGHQN IQFPQFGHSP SDMPNYQLQQ TNSHQISDML QNDQLGRLQG LDISSKGSTL  360
VKSEAPSISA SESSTTF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269\|PubMed:14704272}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g467120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013460447.1	0.0	transcription factor RF2b
Swissprot	Q6S4P4	1e-102	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A072V8H4	0.0	A0A072V8H4_MEDTR; BZIP transcription factor
STRING	XP_004500364.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1548	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	4e-99	bZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr3g467120.1
Entrez Gene	25491078

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]