PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g465350.1 | ||||||||
Common Name | MTR_3g465350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bZIP | ||||||||
Protein Properties | Length: 220aa MW: 25371.4 Da PI: 6.3122 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 19.8 | 1.8e-06 | 69 | 111 | 16 | 58 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 16 AArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +A rsR++ ++ L +kvk +ea+ ++L++++e+ +++ + Medtr3g465350.1 69 SAHRSRRKEDQYFTYLSKKVKDIEAQVTDLRSQVESKQNQKHS 111 8********************************9987776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-5 | 69 | 112 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGDIEGNYNH VPFQTKPPLC PPTSGSVWGA TFNHSAANLR ANLGLNSDQN MNPKRIRRSY 60 IDTFTQDYSA HRSRRKEDQY FTYLSKKVKD IEAQVTDLRS QVESKQNQKH SLMLERERLM 120 DQVAIHHKKA LHKDAESEEL KIQVKKLREL YVNQKAEELA QLINGNYTNV QPMSNEQGPL 180 QSQMWTPAVS DEHETEPSSM ELWVMELMDQ NPNIDDLFL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g465350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157647 | 5e-47 | AC157647.42 Medicago truncatula clone mth2-66k5, complete sequence. | |||
GenBank | CU468301 | 5e-47 | CU468301.11 M.truncatula DNA sequence from clone MTH2-53K24 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A072UY95 | 1e-164 | A0A072UY95_MEDTR; Uncharacterized protein | ||||
STRING | AES70089 | 1e-119 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18156 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42380.2 | 1e-09 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g465350.1 |
Entrez Gene | 25490968 |
Publications ? help Back to Top | |||
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