PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g408380.1 | ||||||||
Common Name | MTR_3g408380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 270aa MW: 30721.3 Da PI: 7.1845 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 7 | 28 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C +C++sFs+ L H+++H Medtr3g408380.1 7 VCLICNRSFSNGKALGGHMKSH 28 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.34 | 6 | 28 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 6 | 33 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.33E-6 | 7 | 28 | No hit | No description |
Pfam | PF13912 | 5.0E-8 | 7 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.33E-6 | 186 | 213 | No hit | No description |
Pfam | PF13912 | 1.4E-7 | 190 | 214 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 191 | 213 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 191 | 218 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 193 | 213 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 2.6 | 238 | 260 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.517 | 238 | 260 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 240 | 260 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MENNGRVCLI CNRSFSNGKA LGGHMKSHYA KLPIHPKLPI HPKPPINNQV LEYSADLAKH 60 PTHSISTSSP SIVSPRNNST YNPQALKVKF KCTPSNFGRN SVFQSCPTNP TGKRSKRKPR 120 QFHMAEEREE NTQFNMAEEK EDNTQLQSVY SDLDIEAAET LGVILKKEWN QIEDKYYTEK 180 KKASENGNTV FECDICHEVF QSGKDLFGHE EIHRKTTNLA GEIGRSGNIY DVVNEKVHKC 240 EYCFDIFESG HVLEEHTKVH LYNYYDSDP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | RSKRKPR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g408380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU467812 | 0.0 | CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013459206.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | A0A072V3Z9 | 0.0 | A0A072V3Z9_MEDTR; C2H2 and C2HC zinc finger protein | ||||
STRING | AES68442 | 1e-168 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17314 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-07 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g408380.1 |
Entrez Gene | 25490348 |
Publications ? help Back to Top | |||
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