PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g061510.1
Common NameMTR_3g061510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 350aa    MW: 38010.4 Da    PI: 5.8872
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g061510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.73.5e-32190246158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQyq+Il+RRq+Rak+e e+kl +ksrkpylheSRh+hAlrR+Rg+gGrF
  Medtr3g061510.1 190 QEPVYVNAKQYQGILRRRQARAKAELERKL-IKSRKPYLHESRHQHALRRARGTGGRF 246
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-35188249IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.453189249IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-27191246IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.2E-23192214IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860194214IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.2E-23223246IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MWVKGNGFGN LDFVPEGSED MQPKSETANQ PRSGPHSFQP GGVYSEPWWR GVGYNPVAQT  60
MSGANSSSLD CPNGDSESNE EGQSLSNSER NEEDDDAAKD SQPAAPNQSG NYGQEQGMQN  120
TASSAVIREE CLTQTPQLEL VGHSIACATN PYQDPYYGGM MAAYPHQPLG YPPFIGVPHA  180
RMPLPLEMAQ EPVYVNAKQY QGILRRRQAR AKAELERKLI KSRKPYLHES RHQHALRRAR  240
GTGGRFAKKT DGEASGKDNG SGPVLSSQSI SSSGSELLPS DSAETWNSPN MRQDARGSNE  300
NGGSSYHNNN NGMQSSRYQG ERVEEGDCSG QLRVSISSNE ASQRRLAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-18190246258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.40930.0flower| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g061510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182700.0JQ918270.1 Medicago truncatula nuclear transcription factor Y subunit A5 (NF-YA5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600468.20.0nuclear transcription factor Y subunit A-1
RefseqXP_024635478.10.0nuclear transcription factor Y subunit A-1
SwissprotQ9LXV59e-82NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLG7IYA40.0G7IYA4_MEDTR; CCAAT-binding transcription factor
STRINGAES707180.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40123461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-80nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  4. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]