PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g011990.1
Common NameMTR_3g011990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 297aa    MW: 32587 Da    PI: 7.6096
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g011990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024100122123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ C++ Fs++  L  H++ H
  Medtr3g011990.1 100 FSCSFCKRQFSTSQALGGHQNAH 122
                      89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.04E-697128No hitNo description
Gene3DG3DSA:3.30.160.603.6E-498126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.718100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVSESSSISS TSRDRGECSH SKKVANMKEI EHIQSSNTKP DNPIDFMKPS KDDPVPVSKV  60
QEHNFFGPIQ IGSSSCFPND NNQGKDENIN EEKNSDSRSF SCSFCKRQFS TSQALGGHQN  120
AHKAERALEK QRKQRYDDSA SSLGQSYFYP TLFRPYDYRS LGVRTESMIQ KPPYISPKIT  180
PHSFGYRHSA LLQEILNPSL VSLRNMRGGN SGFGNLAIGG ASTSRIEDGT NNKIGAILKL  240
GDSSTNVAAS SNSNIEKQII VAPTSTKDDI HDQSKSNIEK EPSDSESSEL DLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g011990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458911.20.0zinc finger protein 1
TrEMBLA0A072UV800.0A0A072UV80_MEDTR; Putative transcription factor C2H2 family
STRINGAES837461e-174(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.16e-16C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]