PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g008240.1 | ||||||||
Common Name | MTR_3g008240 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | FAR1 | ||||||||
Protein Properties | Length: 204aa MW: 23012.4 Da PI: 9.1081 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 56.9 | 6.7e-18 | 50 | 157 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkek.dgkw 76 +fY +YA+++GFsvr+ ++k+ k+++++ +vC+k+g+++ + + + + ++++e+r+gCka + +k++k +++ Medtr3g008240.1 50 DFYGNYAYNIGFSVRTMLKSKNnsqnKKSDKVHYVCYVCNKQGFKKGSLLNsnnmptsdspvviEFVKVKEKPEERVGCKAGIYLKLDKvFNVY 143 6*************9865555545568889999999*********9988888899****99999888999*******************9**** PP FAR1 77 evtkleleHnHela 90 ++++ + H H+l Medtr3g008240.1 144 KIYRWDVAHCHPLH 157 ************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.9E-14 | 50 | 157 | IPR004330 | FAR1 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MDLISTPSES GQLSVETSLL IHADSSQCYS PSNKESWKSL VFKTIKEIED FYGNYAYNIG 60 FSVRTMLKSK NNSQNKKSDK VHYVCYVCNK QGFKKGSLLN SNNMPTSDSP VVIEFVKVKE 120 KPEERVGCKA GIYLKLDKVF NVYKIYRWDV AHCHPLHKLE HLCYLRSFRE VNEVQGQLAL 180 INSKAGMSMR TSYEVMGQGV GGT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g008240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU467812 | 0.0 | CU467812.5 M.truncatula DNA sequence from clone MTH2-6G22 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013441754.1 | 1e-139 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | G7IVL6 | 1e-149 | G7IVL6_MEDTR; FAR1 DNA-binding domain protein | ||||
STRING | AES68435 | 1e-150 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14214 | 2 | 15 |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g008240.1 |
Entrez Gene | 11409121 |
Publications ? help Back to Top | |||
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