PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g105290.1 | ||||||||
Common Name | MTR_2g105290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20535.5 Da PI: 7.9072 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.2 | 3.8e-22 | 19 | 67 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k++e +sn+ vtfskRr+g++ KA+EL+vLCd+ +a+i+fs+ +kly + Medtr2g105290.1 19 KKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCF 67 57899******************************************87 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.3E-30 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 25.371 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-26 | 11 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-19 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-22 | 20 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-19 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.9E-19 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MDMVNQRKKN MGRQKIEIKK VEKDSNKLVT FSKRRQGLFR KASELCVLCD VHAAIIVFSP 60 GDKLYCFGQP DTNVVLNSYI KGTTEFEDSK SAENSPTCKD YNRQYEEAQK MLETEKKKLE 120 DVQNLAKIFN KGDWWNDSID DMSSDQLEQF MVSIYELRRK LVERADELVM KQSVMP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-14 | 11 | 104 | 1 | 91 | MEF2C |
5f28_B | 1e-14 | 11 | 104 | 1 | 91 | MEF2C |
5f28_C | 1e-14 | 11 | 104 | 1 | 91 | MEF2C |
5f28_D | 1e-14 | 11 | 104 | 1 | 91 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g105290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC126781 | 1e-167 | AC126781.22 Medicago truncatula chromosome 8 clone mth2-12m15, complete sequence. | |||
GenBank | AC174357 | 1e-167 | AC174357.6 Medicago truncatula chromosome 8 clone mth2-26c10, complete sequence. | |||
GenBank | BT142542 | 1e-167 | BT142542.1 Medicago truncatula clone JCVI-FLMt-2F17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465623.1 | 1e-129 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A072VC91 | 1e-128 | A0A072VC91_MEDTR; Agamous-like MADS-box protein AGL62 | ||||
STRING | AES84416 | 1e-125 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-33 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g105290.1 |
Entrez Gene | 25487994 |
Publications ? help Back to Top | |||
---|---|---|---|
|