PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g104590.1 | ||||||||
Common Name | MTR_2g104590 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 233aa MW: 26354.8 Da PI: 6.4378 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.4e-10 | 70 | 115 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++ +f eL +P + kK +K+ +L +Av+Y+ +Lq Medtr2g104590.1 70 HIITERNRRRELTRKFIELSAFIPGL-----KKTDKVHVLGEAVKYVAQLQ 115 8899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.243 | 65 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-14 | 68 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.23E-7 | 70 | 119 | No hit | No description |
Pfam | PF00010 | 6.0E-8 | 70 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.8E-13 | 70 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-9 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
EMEECLSHTN NIFDEEFLKD ILNQTPQDQS INVSHSTQHA HHDSLPLSSS KADHGSNSRK 60 TRSASETLDH IITERNRRRE LTRKFIELSA FIPGLKKTDK VHVLGEAVKY VAQLQERVKE 120 LEEDIKKKGA GSLITITRSH LLDDNDTAMG EMNTKECYRH NETFPELEVR VLGKELQILH 180 LSITTTNVLP FGNTLNITII AQMGDKYKLT VEDLVKKLRV VATLQACDDV QQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g104590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024632965.1 | 1e-131 | transcription factor bHLH18 | ||||
TrEMBL | G7IMB7 | 1e-170 | G7IMB7_MEDTR; Helix loop helix DNA-binding domain protein (Fragment) | ||||
STRING | AES68227 | 1e-171 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15398 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 2e-34 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g104590.1 |
Entrez Gene | 11436840 |
Publications ? help Back to Top | |||
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