PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104590.1
Common NameMTR_2g104590
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 233aa    MW: 26354.8 Da    PI: 6.4378
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-1070115555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++  +f eL   +P +     kK +K+ +L +Av+Y+ +Lq
  Medtr2g104590.1  70 HIITERNRRRELTRKFIELSAFIPGL-----KKTDKVHVLGEAVKYVAQLQ 115
                      8899**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.24365114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-1468132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-770119No hitNo description
PfamPF000106.0E-870115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1370126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-971120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
EMEECLSHTN NIFDEEFLKD ILNQTPQDQS INVSHSTQHA HHDSLPLSSS KADHGSNSRK  60
TRSASETLDH IITERNRRRE LTRKFIELSA FIPGLKKTDK VHVLGEAVKY VAQLQERVKE  120
LEEDIKKKGA GSLITITRSH LLDDNDTAMG EMNTKECYRH NETFPELEVR VLGKELQILH  180
LSITTTNVLP FGNTLNITII AQMGDKYKLT VEDLVKKLRV VATLQACDDV QQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632965.11e-131transcription factor bHLH18
TrEMBLG7IMB71e-170G7IMB7_MEDTR; Helix loop helix DNA-binding domain protein (Fragment)
STRINGAES682271e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15398711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-34bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]