PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g104530.1
Common NameMTR_2g104530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 281aa    MW: 31479.5 Da    PI: 9.5286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g104530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.1e-12106151555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h  +ErrRR ++ ++f eL  ++P +     kK +Ka+i++ A++Y+ +Lq
  Medtr2g104530.1 106 HTLAERRRRLELAHKFTELSAIIPRS-----KKTDKASIVQGAINYVEKLQ 151
                      999*********************99.....9*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.74E-1199154No hitNo description
SuperFamilySSF474593.01E-14100167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.303101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13106162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-9106151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-12107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDMDWLESMC HQDGEFLGEY MAQQSSIVAA GAAAATEINA SPPELLPITS ILSSNNSMAT  60
ILGKSKPPCY PKKRTSSNLN FESKANGTGL AKEEKIIRSK SKTLFHTLAE RRRRLELAHK  120
FTELSAIIPR SKKTDKASIV QGAINYVEKL QKRVMELEVQ QNKRGKEPII LLNKENSCEM  180
NLDNYLRPIN NFLPDVKVKV LENNILIYIN CEKENGIQHK ILDMLQNLHL FVTSTSILPF  240
GNSTLGITII AQMGDAYRMT MMDLVDNIRK LLVNGANRRT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g104530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597970.30.0transcription factor bHLH25
TrEMBLG7IMB10.0G7IMB1_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES682210.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1897525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-28bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]