PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099490.1
Common NameMTR_2g099490, NF-YA4
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YA
Protein Properties Length: 348aa    MW: 38763.1 Da    PI: 8.3264
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099490.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.92.6e-31187243158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVN+KQy++I++RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg gGrF
  Medtr2g099490.1 187 EEPIYVNSKQYHAIMRRRQCRAKLEAHNKL-IKDRKPYLHESRHVHALKRARGAGGRF 243
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.3E-37185246IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.393186246IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-26188243IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-23189211IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860191211IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-23220243IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKCLCEKDSA HSTPHHIFGC PSWGTSSESQ VQQTSMSKGL SFKVEALPQE CHNSKALSFQ  60
FQEQDSSSTQ STGSSQSGQI PFQHCSSTGS TFKRTEENNM GCLIGSSSIG SPNLTVHPPL  120
MDHSQSLAHV ALHYADPGYN GLLSASYGQQ YKLQAYSIMS SNSDQLLQGQ LMETASVRIP  180
LPSDMAEEPI YVNSKQYHAI MRRRQCRAKL EAHNKLIKDR KPYLHESRHV HALKRARGAG  240
GRFLNAKKLQ ESKLDSPNHG QNVSTGYTCL NLNGNMSEPK MHDQVENYRD DASDVAYGSN  300
RNEMFQQQQE LEFRLCSYPS SQTGRNMQDY TSDKNVGANQ RRLSVRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-21187257272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.259110.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182690.0JQ918269.1 Medicago truncatula nuclear transcription factor Y subunit A4 (NF-YA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597550.20.0nuclear transcription factor Y subunit A-8 isoform X1
TrEMBLG7IS210.0G7IS21_MEDTR; CCAAT-binding transcription factor
STRINGAES678010.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.46e-49nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]