PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g098880.2

Common Name

MTR_2g098880

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 265aa MW: 30835.5 Da PI: 6.2995

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g098880.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.1	9.4e-26	88	177	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+ Y++++GF+vr++++++s+ n+e + ++fvCskeg+r+++ +++++ + + tr gC+a++++ ++++gkw+vtk+++eH+H+l+ Medtr2g098880.2 88 FYDGYGRRIGFTVRIHHNRRSRVNNELIGQDFVCSKEGFRAKKYVHRKDR-VlpPPPATREGCQAMIRLALRDEGKWVVTKFVKEHTHKLM 177 9***************************************99883333.2448899*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-22	88	177	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MEKRQKWTIG FEMMDHQSGQ GFDSDGSDFD VLAEISEKHE KVEDEFTNSL ELCTGEDKEF 60 VEQPVADSDT LEPFIGMQFN SREEARGFYD GYGRRIGFTV RIHHNRRSRV NNELIGQDFV 120 CSKEGFRAKK YVHRKDRVLP PPPATREGCQ AMIRLALRDE GKWVVTKFVK EHTHKLMSPG 180 EVPWRGSGKH LVSEDEKDRR IRELSLELHN ERQKYKRRCA AYEEQLNTIL NDLEKHTEHI 240 SKKVADVVQN IREIEEEKSD SDGR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g098880.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146574	0.0	AC146574.6 Medicago truncatula clone mth2-145j21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003597516.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024632575.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A072VD01	0.0	A0A072VD01_MEDTR; FAR-RED impaired response-like protein
STRING	AES67767	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-44	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Medtr2g098880.2
Entrez Gene	11435246

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]