PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g084315.1
Common NameMTR_2g084315
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 294aa    MW: 32476.1 Da    PI: 7.3916
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g084315.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091212232323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C++Cg  F++   L  H+r+H
  Medtr2g084315.1 212 CSICGAEFTSGQALGGHMRRH 232
                      ********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.77E-8124147No hitNo description
PROSITE profilePS5015710.076125152IPR007087Zinc finger, C2H2
PfamPF139125.8E-10125149IPR007087Zinc finger, C2H2
SMARTSM003550.56125147IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8205232No hitNo description
PfamPF139121.0E-11209234IPR007087Zinc finger, C2H2
SMARTSM003550.098210232IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.224210232IPR007087Zinc finger, C2H2
PROSITE patternPS000280212232IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDMEGIIGSE EHGNDAGHLI KGKRTKRLRQ LSPVTVATAT MTSSCSSATG GGGSFSSTTF  60
DDTEHEEEAD MANCLILLAQ GRTGRDEENQ NLRPQNHHLH NNSQQVDGYN KTTTEKETKN  120
GFDSYECKTC NRFFHSFQAL GGHRASHKKP KMKEDKQSSP PRPRQLITAT GEFEQENKQI  180
HPKNINPLVP PVSLELRCGV NINFKPNKVH GCSICGAEFT SGQALGGHMR RHRACINNNN  240
NNNKNNNVGV VTGFEDVHVR SRNVLELDLN LPAPEEDLRD STFQFPALVG CHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g084315.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX873742e-38X87374.1 P.sativum putative zinc finger protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464844.20.0zinc finger protein ZAT5
TrEMBLA0A396JB230.0A0A396JB23_MEDTR; Putative transcription factor C2H2 family
STRINGXP_004487558.11e-123(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.15e-51C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]