PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g081820.1
Common NameMTR_2g081820
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 438aa    MW: 48807.8 Da    PI: 6.7943
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g081820.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86.2e-063283661154
                      HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Medtr2g081820.1 328 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 366
                      5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.582317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-11327379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.88E-7327370No hitNo description
SMARTSM003530.0049328372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-9331374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MADDDQFHHS SGNWWDTASR NMRFNQSGGT SQSSSSTITN NIVDFAWQNS DMVEIKPRSS  60
MENSSVVFHD NQKLQQPQDS STSSDPNLHM MGLGLSSHTL DWNQPSLIRG EKGTENSFRS  120
ILEENLSSTR NNFEQENVMG MCQQVNRNNF SLDQNQFSPQ YSSGDSNVIT SQCLPTNFQM  180
DSSTLYGTPS ILQGSFENRS MSSTFPYPTN NYGLNSNNEL NIMPASNNWS NNKVPQFFMR  240
TSPPKQPTNN QLHFTNNTPF WNASEAPNSV KDVRSTFFPS LQPQFSPSNF DSHSKNISEV  300
SVVKKSGSEP APKRTRNETP STLPAFKVRK EKMGDRITAL QQLVSPFGKT DTASVLSEAI  360
EYIKFLHEQV TVLSTPYMKS GAPSEIQQNS GKLKKCEGTK QDLKSRGLCL VPVSSTFPVT  420
HETTVDFWTP TFGGTSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g081820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596544.10.0transcription factor bHLH123 isoform X1
SwissprotQ8GXT35e-75BH123_ARATH; Transcription factor bHLH123
TrEMBLG7ITL90.0G7ITL9_MEDTR; BHLH transcription factor-like protein
STRINGAES667950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.12e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]