PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g076060.1
Common NameMTR_2g076060, MtrDRAFT_AC151598g14v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 226aa    MW: 25117.1 Da    PI: 7.4196
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g076060.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-055274123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C k F++   L  H+++H
  Medtr2g076060.1 52 YTCSFCRKEFKSAQALGGHMNVH 74
                     9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.01E-64978No hitNo description
Gene3DG3DSA:3.30.160.603.8E-45076IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.8E-65275IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.3445279IPR007087Zinc finger, C2H2
SMARTSM003550.0035274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MMKRNNMNTN LKGYNHTYYN NPIITNKSDN NNGSSSEDYM MNGCYPWPPR SYTCSFCRKE  60
FKSAQALGGH MNVHRRDRAR LRQSSPPTTH EPAQLNEGSS MLNLNLNNPT ITTTNPNLFS  120
HSSSSSSSLS SSSATSLKPI TCTLPLFVSP PSEFNRYVVV DGILLNPTLT TKTSEKSKMD  180
GFECEDDCGM VKKSEILRMD LEIGLPGDYD NLDLELRLGT TTYSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134774229superman protein
2l1o_A2e-134774229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g076060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515980.0AC151598.2 Medicago truncatula chromosome 2 clone mte1-49g8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596336.21e-161transcriptional regulator SUPERMAN
TrEMBLQ2HSC71e-164Q2HSC7_MEDTR; C2H2 type zinc finger transcription factor family protein
STRINGAES665871e-165(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-22C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]