PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g067000.1
Common NameMTR_101s0019, MTR_2g067000
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 299aa    MW: 34543.6 Da    PI: 4.4817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g067000.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.52.3e-08169213655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++ r RR++i ++ +eL +l+P       +K++ ae+L  A +Y+k Lq
  Medtr2g067000.1 169 SIAARERRRKITEKTQELGKLVPGG-----PKMNTAEMLNAAANYVKFLQ 213
                      67789******************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.97163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-12165223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-9166216No hitNo description
Gene3DG3DSA:4.10.280.101.4E-11168220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6169213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGALSTYFNY NCYPYQPTQT TNNNSEITTF QHHEQEQNHY FNEASLLDES FIFQTYPCQD  60
QQLLVDSTFS SQNDDFVSMN EIFPNEEDFI FNNYQLPCPK RQKLIYYEEE KREEPQQELL  120
NSTNFFMDEF VTNPNPNPFA SFEAEVEPPF AATSKIEKKV TERTISSQSI AARERRRKIT  180
EKTQELGKLV PGGPKMNTAE MLNAAANYVK FLQAQVGMLQ LMETFSKEEK EPPPSEELHK  240
LVVSPFVQEK LYSEEKCFVP KEFVTTLSNH DDVQSKPTIL KGLKQLVGTE IEKKSDQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g067000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464235.10.0transcription factor bHLH52
TrEMBLG8A0A10.0G8A0A1_MEDTR; Transcription factor
STRINGAES848890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.14e-35bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]