PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g064160.1
Common NameMTR_2g064160
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 314aa    MW: 35920.3 Da    PI: 6.5765
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g064160.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l+ +++ +G ++W+++++  g+ R++k+c++rw +yl
  Medtr2g064160.1 13 RGLWSPEEDDKLITYITTHGHKSWSSVPKFAGLQRCGKSCRLRWTNYL 60
                     788*******************************************97 PP
2Myb_DNA-binding55.61.2e-1766109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE+++++d ++ lG++ W+ Ia++++ gRt++++k++w++
  Medtr2g064160.1  66 RGSFTAEEEQIIIDIHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.432860IPR017930Myb domain
SuperFamilySSF466892.24E-2910107IPR009057Homeodomain-like
SMARTSM007171.1E-121262IPR001005SANT/Myb domain
PfamPF002492.9E-151360IPR001005SANT/Myb domain
CDDcd001672.62E-101660No hitNo description
PROSITE profilePS5129426.46861115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2664116IPR009057Homeodomain-like
SMARTSM007171.8E-1665113IPR001005SANT/Myb domain
PfamPF002498.0E-1666109IPR001005SANT/Myb domain
CDDcd001671.24E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGHHCCSKQK IKRGLWSPEE DDKLITYITT HGHKSWSSVP KFAGLQRCGK SCRLRWTNYL  60
RPDLKRGSFT AEEEQIIIDI HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGL  120
DPQTHNLLSS SHPKRNNSNY KSSNSIFILS SQMPPNTNYL IETTNQTFPS LPKPLQNNIL  180
QTPTSVSPNQ YQASFNVISN QLSVPEHELP RILTENISNI CSTSCNENSI WVSRVDDCRG  240
SMLEEGTQAH VEQEKEKICE KGMDEKEVNE KEDIEMNGCF ENSNFDFGLL ESVLNSEFIS  300
HDLDYMDQLA WNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g064160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494920.0AC149492.14 Medicago truncatula clone mth2-99d10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595957.10.0transcription factor MYB61
TrEMBLG7IGW80.0G7IGW8_MEDTR; Myb transcription factor
STRINGAES662080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-84myb domain protein 67
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]