PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g013920.1 | ||||||||
Common Name | MTR_2g013920 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 175aa MW: 20144.3 Da PI: 10.168 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.2 | 1.1e-11 | 10 | 60 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + + +Er+RR++++ ++L +llP++ +sk s + L++A++YIk+Lq Medtr2g013920.1 10 VDRKFVERNRRNQMKALCQKLNSLLPHQ---TSKEaISVPDQLKEATNYIKKLQ 60 556779*********************8...66666*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.51E-12 | 5 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.92E-6 | 5 | 64 | No hit | No description |
PROSITE profile | PS50888 | 10.988 | 7 | 59 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-11 | 9 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.3E-8 | 13 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 175 aa Download sequence Send to blast |
MENNPSSSRV DRKFVERNRR NQMKALCQKL NSLLPHQTSK EAISVPDQLK EATNYIKKLQ 60 INLEKMKEKK NFLLGIQRPN VNLNRNQKMG LKSPKIKIQQ IGLVLEVVLI TGLESQFLFS 120 ETFRVLHEEG VDIVNASYKV NEDSVFHSIH CQVGEFGNEA ARISERLKKF MQDY* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g013920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC149801 | 0.0 | AC149801.3 Medicago truncatula chromosome 2 clone mth2-32i15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593591.1 | 1e-125 | transcription factor bHLH162 | ||||
TrEMBL | G7IPU7 | 1e-124 | G7IPU7_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | AES63842 | 1e-125 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF906 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-45 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g013920.1 |
Entrez Gene | 11446809 |
Publications ? help Back to Top | |||
---|---|---|---|
|