PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g011070.1
Common NameMTR_2g011070
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 417aa    MW: 46385.5 Da    PI: 4.8693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g011070.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.1e-053063431254
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Medtr2g011070.1 306 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 343
                      677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973294343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.21E-6304347No hitNo description
SuperFamilySSF474597.33E-12304361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-9308351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042631Biological Processcellular response to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071472Biological Processcellular response to salt stress
GO:2000214Biological Processregulation of proline metabolic process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAEEFHAGIC GETWWNINNS TRSVFPLMMN SSSTCSVAAN DVGNYSTWQN DFLGLKETIR  60
TCSDIEVNNF DVSDCSLSFL DPQKPQIMGF DLLSPTSSNW NQSLFNDSQI QKEWSTKNLS  120
STSGSQVSRM DQEFSLEQQN MNSGLSCGYP IGSVNNSYNY PSSLIQSLFD PELQPEPQPQ  180
PQNSLFTNPS MSSSYSSSSN ELSPTWTSLM KHSMPKQQLS GLLFSNNTPF WNASADALND  240
IRAGVFVSSQ PQHQSPNFED NKFNSPNTLL NKLKRDKSPE TKNSSETAVK RPRIETPSPL  300
PTFKVRKEKL GDRITALQQL VSPFGKTDTA SVLHEAIEYI KFLHDQVNVL STPYMKSGSP  360
IQHQQDCDNV NESEGKKQDL RSQGLCLVPI SSTFPMTNET PVDFWTPTFG GPLFGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g011070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1875430.0AC187543.3 Medicago truncatula strain A17 clone mth2-74p6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003593403.10.0transcription factor bHLH112
TrEMBLG7IK440.0G7IK44_MEDTR; BHLH transcription factor-like protein
STRINGAES636540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.12e-62bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]