PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g101280.1

Common Name

MTR_1g101280

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HD-ZIP

Protein Properties

Length: 754aa MW: 82352.6 Da PI: 5.5544

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g101280.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.6	7e-21	57	112	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k Medtr1g101280.1 57 KKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 112 678899***********************************************999 PP
2	START	173.3	1.5e-54	265	487	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetle 83 la++a++el+k+a+ ++p+W k +++n++e+ + +++ + + +ea r++g+v+ ++ lve+l+d ++ ++ ++a+ + l+ Medtr1g101280.1 265 LALAAMDELLKMAQTDSPVWIKGLdgerDMLNQEEYARLISSCIGpkpagFVTEATRDTGIVIINSLALVETLMDANRyadMFQSMIARSANLD 358 6899*****************99999*******988777999999**********************88888888888** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 v+s g ga++lm +e q+lsplvp R + ++R+++q+ +g+w++vdvSv+ +p++ ++++ +++lpSg+++++++ng+skvtw+eh+ Medtr1g101280.1 359 VLSGGiggtrnGAIHLMHTEVQLLSPLVPvRQVRILRFCKQHAEGVWAVVDVSVEIGHDPSNAQPFISCRRLPSGCIVQDMPNGYSKVTWIEHW 452 ****************************************************************************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqce 205 +++++++h+l+r+l+ sg +ga +w atlqrqce Medtr1g101280.1 453 EYDESIVHQLYRPLLISGFGFGAHRWIATLQRQCE 487 ********************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-20	40	114	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-22	43	108	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.961	54	114	IPR001356	Homeobox domain
SMART	SM00389	4.3E-19	55	118	IPR001356	Homeobox domain
CDD	cd00086	6.60E-19	56	114	No hit	No description
Pfam	PF00046	1.6E-18	57	112	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	89	112	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.089	255	491	IPR002913	START domain
SuperFamily	SSF55961	3.94E-29	256	488	No hit	No description
CDD	cd08875	6.27E-111	259	487	No hit	No description
SMART	SM00234	1.8E-38	264	488	IPR002913	START domain
Pfam	PF01852	8.5E-47	265	487	IPR002913	START domain
SuperFamily	SSF55961	1.28E-22	515	747	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MEGQSEIGLT GDSLDTGLLG RMREDEYESR SGSDNFDLEG LSGDDQDGGD DGQRKRKKRY 60 HRHTPNQIQE LESFFKECPH PDEKQRLDLS KRLGLENKQV KFWFQNRRTQ MKTQLERHEN 120 IMLRQENDKL RGENSMMKEA MVNPICNNCG GPAIPGQILF EEHQIRIENA RLKDELNRIC 180 ALTNKFLGKP ISSLANPMAL PTSNSGLELG IGRNGFGGGS SSLGNPLPMG LDLGDGRSMP 240 GISSPMGLMG SSSDVQLERS ALIDLALAAM DELLKMAQTD SPVWIKGLDG ERDMLNQEEY 300 ARLISSCIGP KPAGFVTEAT RDTGIVIINS LALVETLMDA NRYADMFQSM IARSANLDVL 360 SGGIGGTRNG AIHLMHTEVQ LLSPLVPVRQ VRILRFCKQH AEGVWAVVDV SVEIGHDPSN 420 AQPFISCRRL PSGCIVQDMP NGYSKVTWIE HWEYDESIVH QLYRPLLISG FGFGAHRWIA 480 TLQRQCEGLA ILMSSSISND DHTALSQAGR RSMLKLAQRM TNNFCSGVCA SSARKWDSLQ 540 MGTLSDDMRV MTRKNVDDPG EPPGIVLSAA TSVWMPVSRQ RLFDFLRDER LRSEWDILSN 600 GGPMQEMVHI AKGQGQGNCV SLLRANAVNA NDSSMLILQE TWMDTSCSVV VYAPVDGQSL 660 NVVMSGGDSA YVALLPSGFA IVPDGNDPSG YGMSNGTLQK GGASDGGGSL LTVGFQILVN 720 SLPTAKLTME SVDTVNNLIS CTIQKIKAAL RVA*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MEGQSEIGLT GDSLDTGLLG RMREDEYESR SGSDNFDLEG LSGDDQDGGD DGQRKRKKRY  60
HRHTPNQIQE LESFFKECPH PDEKQRLDLS KRLGLENKQV KFWFQNRRTQ MKTQLERHEN  120
IMLRQENDKL RGENSMMKEA MVNPICNNCG GPAIPGQILF EEHQIRIENA RLKDELNRIC  180
ALTNKFLGKP ISSLANPMAL PTSNSGLELG IGRNGFGGGS SSLGNPLPMG LDLGDGRSMP  240
GISSPMGLMG SSSDVQLERS ALIDLALAAM DELLKMAQTD SPVWIKGLDG ERDMLNQEEY  300
ARLISSCIGP KPAGFVTEAT RDTGIVIINS LALVETLMDA NRYADMFQSM IARSANLDVL  360
SGGIGGTRNG AIHLMHTEVQ LLSPLVPVRQ VRILRFCKQH AEGVWAVVDV SVEIGHDPSN  420
AQPFISCRRL PSGCIVQDMP NGYSKVTWIE HWEYDESIVH QLYRPLLISG FGFGAHRWIA  480
TLQRQCEGLA ILMSSSISND DHTALSQAGR RSMLKLAQRM TNNFCSGVCA SSARKWDSLQ  540
MGTLSDDMRV MTRKNVDDPG EPPGIVLSAA TSVWMPVSRQ RLFDFLRDER LRSEWDILSN  600
GGPMQEMVHI AKGQGQGNCV SLLRANAVNA NDSSMLILQE TWMDTSCSVV VYAPVDGQSL  660
NVVMSGGDSA YVALLPSGFA IVPDGNDPSG YGMSNGTLQK GGASDGGGSL LTVGFQILVN  720
SLPTAKLTME SVDTVNNLIS CTIQKIKAAL RVA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	57	RKRKK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g101280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149494	0.0	AC149494.4 Medicago truncatula clone mth2-116m7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024625328.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A396JYM0	0.0	A0A396JYM0_MEDTR; Putative transcription factor & lipid binding HD-SAD family
STRING	AES62546	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Medtr1g101280.1
Entrez Gene	11429203

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]