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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g093680.1 | ||||||||
Common Name | MTR_1g093680 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | NAC | ||||||||
Protein Properties | Length: 482aa MW: 54345.3 Da PI: 4.5602 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99 | 6.6e-31 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksg 81 lp+G++F+P+d+e++++ L+ kv + + ++++ ++ +i++++P++Lp v+++ +fF+++ k+y+tg+rk+r+ + Medtr1g093680.1 58 LPKGVKFDPSDQEIIWHLLA-KVGEGNlephpfIDEFIStLQMDdGICYTHPKRLP-GVSQDGIASHFFHRAIKAYNTGSRKRRKicgqdFGDV 149 799************66655.5555554776553332221333336**********.555666789******************7444444488 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tg++k++l +g ++g+kk++v+y ++ k+ekt+Wvmh+y+l Medtr1g093680.1 150 RWHKTGRTKPILL-NGLQKGCKKIMVLYmtLESGGKAEKTNWVMHQYHL 197 9************.999***********5434667788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-37 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.741 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MAASGPSWLV DKRRIATKIK RASEATEKVI WESNPTRACP NCQHVIDNSD VTQEWPGLPK 60 GVKFDPSDQE IIWHLLAKVG EGNLEPHPFI DEFISTLQMD DGICYTHPKR LPGVSQDGIA 120 SHFFHRAIKA YNTGSRKRRK ICGQDFGDVR WHKTGRTKPI LLNGLQKGCK KIMVLYMTLE 180 SGGKAEKTNW VMHQYHLGRQ EDEKDGEYVI SKVFYQQQQA KLGEKDDQNV PETTEATVVK 240 VDPVTPNSVT PEPPRNEKHC SDVDQEQESH HSPQILPNLS RLEWLLESQD DCEELAKTDS 300 SMIETQTNVG VDNFDLSHNL LDSQQLESQD DWEELAKTDS STVETQTNVG VDNFDLSQNL 360 LDSQQLAEGL SLFADFFQSQ SPKRDGESGE QMERPSLSVY AHLGAEQLKK DIEECQNLEL 420 NTTKKNDIEE CLNLDVETEK NLNLDTANVE LDSQPSDIRL SQLEFSSQDS YIAWGGCKTI 480 N* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoot and root apical meristems, in lateral root primordia, in the vasculature of young leaves and in the root stele. {ECO:0000269|PubMed:23907539}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g093680.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003591828.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-147 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | G7I498 | 0.0 | G7I498_MEDTR; NAC transcription factor-like protein | ||||
STRING | AES62079 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-143 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g093680.1 |
Entrez Gene | 11406966 |