PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g084980.1
Common NameMTR_1g084980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 722aa    MW: 77169.9 Da    PI: 6.9081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g084980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.3e-16472518455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Medtr1g084980.1 472 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 518
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.53E-17464522No hitNo description
Gene3DG3DSA:4.10.280.109.0E-21465526IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-21465530IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13472518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-18474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MPLYELYRLA REKLDNETNG TSVADQPSSP ENDFFELVWE SGQISSQGQS SRGRKSPSCR  60
SLPSHCLPSH SPRGRDKDKD VGGGFSNNNP KIGKFGDLDS GLNEIPMSVP SREVDEMMPW  120
LDYSMDGSLQ HEYGSDFFHE LTENDLPASN SFTLLDKRNN GNQIFRDSHK NSAEAMNVSK  180
GSSAEQVVET ARHKASASQL YPPSSNQCQT TSVTVRSRAS DITENNNVSS GNQDVPYGDI  240
TRIPSSSSDF SSLKAQKQDP VMPGNGSNVM NFSHFARPAA IVRANLQNIG LKSGLNSASA  300
RSDIMGVKNK GAASTSSNPP DSALVNPSGE CSKEPEMRCH KVVEPSKADL KPLQPKSLEP  360
NAVATKQSKP ACKENGIKND QPSIQVLGDN GAKGHAAADK GMEVAVASSS VCSGNGADRG  420
SDDPNRDLKR KSRDTEDSEC HSEDVEDESV GVKKGAAGRG VAGSKRSRAA EVHNLSERRR  480
RDRINEKMRA LQELIPNCNK VDKASMLDEA IEYLKTLQLQ VQMMSMGAGL YMPQMMLPAG  540
MQHMHAPHMA AFSQTGIGMH MGLGMGYGMG MPDMNGVPSR FPMIQVPQMQ GNHVPVAHMP  600
GPSAMHGMAR SNTQGFVLPG QGTSMPMPHT PVFPFSGGPL MNSSAPGPSV YGSTGHVEAV  660
NPASACGSKD RRPDVDSKIK QNTAGRDSTS QIPNQSTLVH NGGHTSVADD SEAANPGNIT  720
L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1476481ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.191570.0leaf| root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g084980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2328690.0AC232869.5 Medicago truncatula clone mth2-13n12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591254.10.0transcription factor PIF3
RefseqXP_024638901.10.0transcription factor PIF3
TrEMBLG7IAC40.0G7IAC4_MEDTR; Phytochrome-interacting factor 3.1
STRINGAES615050.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-55phytochrome interacting factor 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]