PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g071360.1
Common NameMTR_1g071360
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 373aa    MW: 43603.4 Da    PI: 5.8361
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g071360.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.1e-35301202101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k++++++d+++++++sw+++g+sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k+++++         weF+++ F +g+++ll+
  Medtr1g071360.1  30 FLTKTFDVVDDQSTNHIVSWNRSGTSFVVWDTHAFSNLLLPRYFKHNNFSSFVRQLNTYGFRKIDSDR---------WEFANEGFLRGQRHLLR 114
                      9****************************************************************999.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+rkk
  Medtr1g071360.1 115 NIRRKK 120
                      ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.8E-5826119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.3E-3727119IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.31E-3327119IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-193053IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3130119IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-196880IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406993IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-198193IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MYSVKEEHLE PTIPPPQPNE GLNEIRPQPF LTKTFDVVDD QSTNHIVSWN RSGTSFVVWD  60
THAFSNLLLP RYFKHNNFSS FVRQLNTYGF RKIDSDRWEF ANEGFLRGQR HLLRNIRRKK  120
GPSQPIEVGC VGLDAEIDRL RQEKHMLMTE LVSLRKQQYN TTLYLLEMEH RLEGIKINQK  180
KMMSFLARAM KNPVFIHQLL QQKEKKKELE EAVTVTKKRR LVEQGTRLGI GQSSSVKVEP  240
LELCDYEFGV SELEMLALEM QVFGRGEMNK EEVHEPEALE SQEKMETVLD DEGFWEDLMF  300
SMKFEGRFDI PTSEDNNENE DDSSEPLSQE FRVAAGARTR FFDSENCHYL HQRLKITQKI  360
YDGQKVTYLL QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-233011929129Heat shock factor protein 1
5d5v_B2e-233011929129Heat shock factor protein 1
5d5v_D2e-233011929129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204219KKKELEEAVTVTKKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g071360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1560120.0AC156012.22 Medicago truncatula clone mth2-168l11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468592.10.0heat stress transcription factor A-7a
RefseqXP_024635873.10.0heat stress transcription factor A-7a
SwissprotQ9LUH82e-96HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLG7ICS10.0G7ICS1_MEDTR; Heat shock transcription factor A3
STRINGAES608290.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.14e-89heat shock transcription factor A6B
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]