PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g070265.1
Common NameMTR_1g070265
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 188aa    MW: 21501.1 Da    PI: 8.6438
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g070265.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-053759123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ F++   L  H+++H
  Medtr1g070265.1 37 YSCSFCKREFRSAQALGGHMNVH 59
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.64E-63463No hitNo description
Gene3DG3DSA:3.30.160.606.4E-43562IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.5E-63760IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.243764IPR007087Zinc finger, C2H2
SMARTSM003550.0063759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEGNYYLNRN TRDHDHHHHN LGFEEHSWGT SWPARNYSCS FCKREFRSAQ ALGGHMNVHR  60
RDRARLRSSL ISSWVNSDQC PNNNKPNPTP SSTTPCSSPL YLSLSSPPSP SLPHTIHDDK  120
KPRLTPSLSL PLLNPQRSEI MMSKSIKSYE EVKKHNVLMN NEQNITLELG IGLFKHQEEK  180
LDLELHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-123259229superman protein
2l1o_A5e-123259229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g070265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013468539.11e-136transcriptional regulator SUPERMAN
TrEMBLA0A072VLS01e-135A0A072VLS0_MEDTR; C2H2-type zinc finger protein
STRINGXP_007144930.12e-55(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.17e-21C2H2 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]