PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g070205.1 | ||||||||
Common Name | MTR_1g070205 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 235aa MW: 26107.8 Da PI: 5.7719 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1.1e-38 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC ++Cv+apyf +eq + +f ++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++ Medtr1g070205.1 12 PCGACKFLRRKCIRGCVFAPYFSHEQgATHFSAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQTQ 105 7*************************89****************************************************************** PP DUF260 94 lallkee 100 la+lke+ Medtr1g070205.1 106 LAYLKEQ 112 ***9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.224 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-37 | 12 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MAGSSSVSSG SPCGACKFLR RKCIRGCVFA PYFSHEQGAT HFSAIHKVFG ASNVSKLLAH 60 LPVSDRCEAA VTISYEAQAR LQDPIYGCVS HIFALQQQVV SLQTQLAYLK EQAAQNCHIN 120 ASTNENPNEK SNSLTLPQDL QTWFHVENSN NHQLGQEFIT NNLSNISLTT QYYGNNTLNM 180 DLDPMRNYEN SRVIEENTSF SSFEESTSNS METNRRTWGF DEVEDLHSVA FGYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 2 | 106 | 1 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 2 | 106 | 1 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:12068116}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g070205.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013468530.1 | 1e-176 | LOB domain-containing protein 29 | ||||
Swissprot | Q9M2J7 | 2e-67 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A072VL56 | 1e-175 | A0A072VL56_MEDTR; Lateral organ boundaries (LOB) domain protein | ||||
STRING | XP_004495114.1 | 1e-125 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 1e-58 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g070205.1 |
Entrez Gene | 25484301 |