PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g060700.1
Common NameMTR_1g060700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 488aa    MW: 56257.2 Da    PI: 5.0975
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g060700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26e-08360403755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ r RR++i ++ +eL +l+P       +K++ ae+L  A +Y+k Lq
  Medtr1g060700.1 360 MAARERRRKITEKTQELGKLVPGG-----PKMNTAEMLNAAANYVKFLQ 403
                      67799*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.50.1401.8E-42070IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.50.1401.8E-4102170IPR012340Nucleic acid-binding, OB-fold
PROSITE profilePS5088812.887353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-12356413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.05E-9359406No hitNo description
Gene3DG3DSA:4.10.280.103.3E-11359410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-11359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5360403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MRTKVSVVEG PLLPMFGLTL TNIVEVNHQT VDNDYLIDGI GLMTVISEVR EYIKDGKITK  60
MILLQLTDHM LISYFMRHVK IYLRFVYRRD DRLNFCLVFV TSGKCEIALF GDYVDHLKQL  120
MAKVDEGLHV LDMQFTKVKI FSENESPQNV VNTTRIMINP DISEAAEFKK GFPIFVNMGA  180
LSTYFNYNCY PYQPIQTTNN SEITTFQHHE QEQFVQQNHH FSSNYLNETS LLDESFIFQT  240
PCFYSTETYP NPCQDDQLLV DSTFSSQNDG FVSMNEIFPN EEDFTNYLTC PKRQKLCYDE  300
KREEPQQELL NSTNFFVDEF MTNPNPFASF EAEPFVASKI VDVVQCEKKV AERTISPQSM  360
AARERRRKIT EKTQELGKLV PGGPKMNTAE MLNAAANYVK FLQAQVGMLQ LMETFSKEEK  420
EPPPSEDLHK LVVSPFVQEK LYSEEKCFVP KEFVTKLSNH NDVQSKPTIL KGLKQLGTEI  480
EKKPKQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g060700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1485281e-174AC148528.15 Medicago truncatula clone mth2-53h4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464235.11e-155transcription factor bHLH52
TrEMBLA0A072VKB30.0A0A072VKB3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES848891e-155(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.17e-30bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]