PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g034240.1
Common NameMTR_1g034240
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 434aa    MW: 49148.4 Da    PI: 9.0364
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g034240.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-17797198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                     f k  +ps+  + ++l++p +f++++g +   s+  tl+ ++g +W++ l  +k ++r+++ +GW++Fv+   +  g f+vF+++g+s+f   v++
  Medtr1g034240.1  7 FHKLILPSSLQT-RQLRIPDNFLRKYGAQ--LSTIATLTVPDGTVWRLGL--KKVDNRIWFVDGWQDFVQRYAIGIGYFLVFTYEGNSNF--IVHI 95
                     555555555555.56***********977..8999***************..**********************************9999..9999 PP

                     E- CS
               B3 97 fr 98
                     f+
  Medtr1g034240.1 96 FN 97
                     86 PP
2B357.13.3e-18302392498
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W v++    k+gr  l++GW eF  +n+L egD++vF+l +++e  l v++
  Medtr1g034240.1 302 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQISDGRQWPVRC--LYKGGRAKLSQGWYEFTLENNLGEGDICVFELLRTREVVLQVTL 390
                      78899******************876743...59999***********..66666778***********************9998888899998 PP

                      E- CS
               B3  97 fr 98 
                      fr
  Medtr1g034240.1 391 FR 392
                      87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-24398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-23399IPR015300DNA-binding pseudobarrel domain
CDDcd100173.07E-20597No hitNo description
PROSITE profilePS5086313.07699IPR003340B3 DNA binding domain
SMARTSM010198.9E-19799IPR003340B3 DNA binding domain
PfamPF023622.8E-15997IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-23291392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-24292393IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-21297392No hitNo description
PROSITE profilePS5086314.043299394IPR003340B3 DNA binding domain
SMARTSM010191.6E-18299394IPR003340B3 DNA binding domain
PfamPF023629.1E-17302392IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MPPRPSFHKL ILPSSLQTRQ LRIPDNFLRK YGAQLSTIAT LTVPDGTVWR LGLKKVDNRI  60
WFVDGWQDFV QRYAIGIGYF LVFTYEGNSN FIVHIFNMST AELNYQSAMR SRTEGPCYAN  120
YHPIFEDIED IDSFEFLDSS PSNLTPGALQ DKVFSGSLDQ LTPAKNHTPS LQNLFNGGSK  180
LNHVNWGDIG GTLSSKSAIQ STRDIGVQFN ANEFKKSTEG LKLRYPNEEG VNNTDTKKTS  240
RKKRKSDPSA QEATAENDEE AERYRFYESA SARKRTVTAE ERERAINESK TFEPTNPFCR  300
VVLRPSYLYR GCIMYLPSCF AEKNLNGVSG FIKLQISDGR QWPVRCLYKG GRAKLSQGWY  360
EFTLENNLGE GDICVFELLR TREVVLQVTL FRVKEDDSGL FNPSTLPSQN VSHAKMLNPH  420
LQHRVSSTKS AKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-7426539515144B3 domain-containing transcription factor VRN1
4i1k_B1e-7426539515144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.56070.0flower| leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g034240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013466718.10.0B3 domain-containing transcription factor VRN1
SwissprotQ8L3W11e-128VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLA0A072VFE70.0A0A072VFE7_MEDTR; B3 domain transcription factor VRN1-like protein
STRINGXP_004498177.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-126B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  3. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]