PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr0011s0210.1
Common NameMTR_0011s0210
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 362aa    MW: 41207.7 Da    PI: 6.2768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr0011s0210.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.4e-10184228554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h ++Er+RR+++ ++f  L  l+P++     kK++K ++L  +++Y+k+L
  Medtr0011s0210.1 184 HIMAERKRREKLTQSFIALAALVPNL-----KKMDKFSVLVDTIKYMKEL 228
                       999***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.437179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15183248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-15183245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-8184228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.64E-10184233No hitNo description
SMARTSM003536.4E-11185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEINSTAMN VSSSSSWLSD LEMDEYNLFA KECNLNFLDT SVEDFLSHDI TINVFQEQNK  60
QQCLTSGSTS TTTLSNTFSD ETKLDCFDFN IDKTIMEMKT IDHSDKINET FTQKRSSSFQ  120
VQIPSFDSPP NSPTTSSQQY PTLNSIQNER VSVSPTELEN KNHSTKTSKT SKTKRSRANN  180
GEDHIMAERK RREKLTQSFI ALAALVPNLK KMDKFSVLVD TIKYMKELKK RLEVLEEQNK  240
RKKTESHVIL TKPDLCSEDD SSSFDEHNES VVGSIFQVEA KVLGKYMLIR IQCKEYKGLL  300
VKIMVEIQRF QLCIVNSSVL PFGDSIFDIT IIAQLGEGYN LSIKELVKNI RKEALKFMSS  360
R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
3228242KKRLEVLEEQNKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.199420.0glandular trichome| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr0011s0210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013443467.10.0transcription factor bHLH18
TrEMBLA0A072TJ790.0A0A072TJ79_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGXP_004509037.11e-124(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-37bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]