PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Mapoly0194s0011.1.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family GRAS
Protein Properties Length: 709aa    MW: 77848.8 Da    PI: 6.3758
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Mapoly0194s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.41e-883166962374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++lLl+cA a+ss+++ ++q+l++ l++l++ +gd++qRlaa+ ++AL  r+++ + e + + p + + +   + +  al+ f++v P++
  Mapoly0194s0011.1.p 316 EQLLLDCAVAISSKNFVRTQHLMWVLNDLSNLTGDANQRLAAHGLKALFCRVNG-TAEAAGTSPIQGQMNAIPKLVHRALQKFHDVNPWH 404
                          689***************************************************.333333444444433334555567777******** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg......skeeleetgerLakfAeelgv 174
                          ++ + +aN+ +le +ege++vH+iD+++sqG+QWp++++aLa+R++gpp  lR+T+v+++e           +      rL++fA+ +g+
  Mapoly0194s0011.1.p 405 QMVYTVANSVMLENFEGEDKVHVIDIGVSQGTQWPTFIEALATRASGPPsLLRLTVVKEEEGAgfpafpLGPSSTDFMARLERFAKLMGI 494
                          *********************************************9999679*******87769999887788889999*********** PP

                 GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles....erdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                          ++  +  v+++le l+ e+L +++gEalaV+ +++lhrl +  +s ++    +rd++L+++ +l+Pkv++++e++adh s++Fl+rf   
  Mapoly0194s0011.1.p 495 NIALSS-VVSSLEGLTREKLGIREGEALAVCTQFRLHRLSETIGSEDQrclsPRDSFLQFLHGLKPKVLILSENDADHLSTDFLTRFRPV 583
                          ******.7999****************************96555554455669************************************* PP

                 GRAS 261 leyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                          ++y+++++ds++ +++ ++ eer+ +E    +r + n vaceg++r+er+e+   W  r++++GF+pv  +e++ ++++ l+rk++ +  
  Mapoly0194s0011.1.p 584 VDYFWKFLDSTSFSFHGKHcEERQIIEDG-EARTLINNVACEGEQRIERNESHLGWTLRMKNSGFHPVLPKEEILDNIRGLIRKYDaN-- 670
                          ***********9999999989******99.88899999************************************************44.. PP

                 GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                          ++   + +++vl Wk++p++++S+W+
  Mapoly0194s0011.1.p 671 WEYAVDTDCVVLLWKQQPVTFCSVWK 696
                          56666789*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.559289677IPR005202Transcription factor GRAS
PfamPF035143.4E-86316696IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MTFGMISYSL KITPLLPLPA PPPPPSQRDV EMQDEVNLLA QKRSVPSTNS SLDLVLEEMD  60
ALAQRSHENL TNLDRVSPDH HRHSPKARSV HWPENVEGGE RTPKRLKSDS CSTRQLQAPT  120
AREVGPIPNT GSNDASLTLL PLELLDLEGP DSAGNEFQRL EGLESSKLSS SNGQGFTMDI  180
EGPTHSTSSP DTTSSDSQKS TPHSRSAESV SKNPQPPPGS FALAKSFAGN SQFHCLEPEK  240
DQNVSPNVFR SLPMVGLTGT QGQRLPVPSV SLPKGTAGGG RSGSTHLMER NVGGRIGANG  300
GAHNESSVAR ESRWAEQLLL DCAVAISSKN FVRTQHLMWV LNDLSNLTGD ANQRLAAHGL  360
KALFCRVNGT AEAAGTSPIQ GQMNAIPKLV HRALQKFHDV NPWHQMVYTV ANSVMLENFE  420
GEDKVHVIDI GVSQGTQWPT FIEALATRAS GPPSLLRLTV VKEEEGAGFP AFPLGPSSTD  480
FMARLERFAK LMGINIALSS VVSSLEGLTR EKLGIREGEA LAVCTQFRLH RLSETIGSED  540
QRCLSPRDSF LQFLHGLKPK VLILSENDAD HLSTDFLTRF RPVVDYFWKF LDSTSFSFHG  600
KHCEERQIIE DGEARTLINN VACEGEQRIE RNESHLGWTL RMKNSGFHPV LPKEEILDNI  660
RGLIRKYDAN WEYAVDTDCV VLLWKQQPVT FCSVWKPSLP LHMSGDEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B9e-5631269884475Protein SHORT-ROOT
5b3h_B3e-5631269830421Protein SHORT-ROOT
5b3h_E3e-5631269830421Protein SHORT-ROOT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024375363.11e-120nodulation-signaling pathway 1 protein-like isoform X3
TrEMBLA0A2R6W1110.0A0A2R6W111_MARPO; Uncharacterized protein
STRINGPP1S72_74V6.11e-117(Physcomitrella patens)
STRINGEFJ248571e-119(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40821525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.13e-74GRAS family protein