PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0083s0069.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

C2H2

Protein Properties

Length: 621aa MW: 66321.6 Da PI: 7.6018

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0083s0069.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.9	1.9e-06	419	440	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ Cgk F+r nL+ H+r+H Mapoly0083s0069.1.p 419 FCNLCGKGFKRDANLRMHMRSH 440 6********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.23E-6	415	442	No hit	No description
SMART	SM00355	0.0015	418	440	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	12.591	418	445	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	420	440	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.4E-6	420	448	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	100	468	501	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	44	506	528	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence Send to blast
MAEFPHFRQK MEDTSHNPFS SSAAASMNFS MGRMHPQQAH SHGQPPIMRQ TFSQVHASAN 60 ASSIGARNAG RRPEAGNMQD GINPQMGHGH PGVHASLGLN HQQQQQNHQN HQNHLNLQQF 120 MEIGQVHMLS GDGASGGAGK GGQFAIGDPN LHAALADIQQ KINKMQEIVR MNGEGVQTNL 180 QQQQQVASAV SLISQVTAAI SEGMLNQNQT QNLSMSDSSQ LSHLFGACSS STGFNFFDHP 240 GSSPVNADMV VGNNNAFSSL PGRMGGNNHD QNTNNLNALG HGQSSMSGTP SATAGDPIFG 300 HGAVTTGSGS SVHPSETVGV GNLRQPPPFN NRMAARPGAG SGMNGSGKAS INRSSPGVMV 360 PSNSASGSHG SEDQEMGVRS RGGASRDDFD DGEGENLVDG SYQLVELDDQ EILAEHTHFC 420 NLCGKGFKRD ANLRMHMRSH GDEYKTPEAL ARPQKPIDEQ TPEIPKRFSC PHVGCKRNVK 480 HRKFQPLKSL LCVKNHYRRS HCAKNLACSK CKVKKFSVVA DLKTHEKHCG CDKWQCSCGT 540 TFSRKDKLFG HVSLFVGHSP AALPLPENLA ENSAGSLEIV DMAPVGSNVD SGLAESTSMV 600 QQGLDSQVSG GYVNWTHQLF *

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence Send to blast

MAEFPHFRQK MEDTSHNPFS SSAAASMNFS MGRMHPQQAH SHGQPPIMRQ TFSQVHASAN  60
ASSIGARNAG RRPEAGNMQD GINPQMGHGH PGVHASLGLN HQQQQQNHQN HQNHLNLQQF  120
MEIGQVHMLS GDGASGGAGK GGQFAIGDPN LHAALADIQQ KINKMQEIVR MNGEGVQTNL  180
QQQQQVASAV SLISQVTAAI SEGMLNQNQT QNLSMSDSSQ LSHLFGACSS STGFNFFDHP  240
GSSPVNADMV VGNNNAFSSL PGRMGGNNHD QNTNNLNALG HGQSSMSGTP SATAGDPIFG  300
HGAVTTGSGS SVHPSETVGV GNLRQPPPFN NRMAARPGAG SGMNGSGKAS INRSSPGVMV  360
PSNSASGSHG SEDQEMGVRS RGGASRDDFD DGEGENLVDG SYQLVELDDQ EILAEHTHFC  420
NLCGKGFKRD ANLRMHMRSH GDEYKTPEAL ARPQKPIDEQ TPEIPKRFSC PHVGCKRNVK  480
HRKFQPLKSL LCVKNHYRRS HCAKNLACSK CKVKKFSVVA DLKTHEKHCG CDKWQCSCGT  540
TFSRKDKLFG HVSLFVGHSP AALPLPENLA ENSAGSLEIV DMAPVGSNVD SGLAESTSMV  600
QQGLDSQVSG GYVNWTHQLF *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A176VD52	0.0	A0A176VD52_MARPO; Uncharacterized protein
TrEMBL	A0A2R6WJV4	0.0	A0A2R6WJV4_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP830	16	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.3	1e-79	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Mapoly0083s0069.1.p