PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0014s0196.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

C3H

Protein Properties

Length: 1158aa MW: 123884 Da PI: 7.1892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0014s0196.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	15	35	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr++a +GtC +Gd+C+FaH Mapoly0014s0196.1.p 15 CRYWATSGTCFFGDQCNFAHN 35 ********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	14.286	9	37	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3E-4	10	36	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-6	13	38	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.1E-6	15	35	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-7	15	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.897	47	76	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.8	49	75	IPR000571	Zinc finger, CCCH-type
CDD	cd00180	1.09E-8	759	901	No hit	No description
SuperFamily	SSF56112	9.06E-12	761	955	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:3.30.200.20	8.6E-7	767	890	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1158 aa Download sequence Send to blast
MSAPHQKLPA SNITCRYWAT SGTCFFGDQC NFAHNTADRA TSGRAVPKRE KACKELLLTG 60 YCKNENDGCE YNHSIPGVTR SGPPTPTTTG ASGSATSSTW SASTSRAATS SAPGTVAAAA 120 IRNKGLPVTA PAFVPAAVAA AQRASLTAWG GLTPGGGSLL TNVNQSPAFF TSTSLTVLSS 180 PSQNGTLSPA STVVGNNSST STSLSVVTRS LETEASGSSE GLPGPSFVSG SLPASLNAQP 240 FVPSGLHASS IVNGVTSASA GTSSSSSIGN ANAAPYVPSG VASAIGAPPY IPKAKQHVLS 300 GVVGAGRPMP EQSHLGLGGI PQQLQLRQQL SQLHMQQQQA AHMLAVAARN MGGNGMSSPY 360 MNMDVPMVMP PFRLPDGDDP ALGMTAMSPP NPAFVIPLTR GSNGSVPVLP APEALASMGI 420 VGDGSGGLQV GSGYPSQMSY GSSMQSQSSV RVQHMHQHMQ KLQMQHHPPP LQLSGQNHPF 480 TLRTTQNVDN PKQQYGVSGT DKQHLNLASD LGTANDGRNP SSSSATTPTH FAGDSQAQDH 540 LPSLSGEMDS QQTIVSDSSS GHQQQQQQQQ QQQQTPQQPL QSPAQLLQSA KQRQQQLQQQ 600 QMLQHQQHMQ LMQQRPQPSN QRPITSPVQH QQRLPFRSPS PVPNVSTVAA TTHGGATYFH 660 GPGQGISSLP HVSQGGPFSG SAGRVEGRIR GQSNVGIVPL GPRFMSDHLR EELRRRHALI 720 HAQLDTDQNI INLPEMVQRF HTLYPLEEVN RDDDSPSCAF GVRSMTFKGI SSSDGIAYAI 780 RRIDSREVVP NPELAASAAE VVERWSPLAR HPHIVSIREC FVSREIEDSA ALFFVHDYYP 840 GSVTLEAMHL HQEQAGGVAP MMISEEQLWS YMVQLAAVLR AVHSAGLFFR PGGLHPSKVI 900 LPTRGRLRVS SAGILDVLNG EATDDPRVFQ REDLAGFGRL ILSLACGSMH NASLDFMAAH 960 YSADLVHVTN ALLASSLDKS DGVGISNIRQ LHHVLTERMF GEIEQLHLQN DELMSEISKE 1020 TENGRLLRIL IKLGMTNELP EDDIESGWSE TGDRYLLKLF RDFVFHQTTE DGNPLIDWGH 1080 VIDSLNKLDA GVPEKMILLS RDERSMLFAS YGDLKRCLEG AYQELVNRGS GDKGRSPMLG 1140 AQSPMVHNPR LKQRQAT*

Sequence ? help Back to Top

Protein Sequence Length: 1158 aa Download sequence Send to blast

MSAPHQKLPA SNITCRYWAT SGTCFFGDQC NFAHNTADRA TSGRAVPKRE KACKELLLTG  60
YCKNENDGCE YNHSIPGVTR SGPPTPTTTG ASGSATSSTW SASTSRAATS SAPGTVAAAA  120
IRNKGLPVTA PAFVPAAVAA AQRASLTAWG GLTPGGGSLL TNVNQSPAFF TSTSLTVLSS  180
PSQNGTLSPA STVVGNNSST STSLSVVTRS LETEASGSSE GLPGPSFVSG SLPASLNAQP  240
FVPSGLHASS IVNGVTSASA GTSSSSSIGN ANAAPYVPSG VASAIGAPPY IPKAKQHVLS  300
GVVGAGRPMP EQSHLGLGGI PQQLQLRQQL SQLHMQQQQA AHMLAVAARN MGGNGMSSPY  360
MNMDVPMVMP PFRLPDGDDP ALGMTAMSPP NPAFVIPLTR GSNGSVPVLP APEALASMGI  420
VGDGSGGLQV GSGYPSQMSY GSSMQSQSSV RVQHMHQHMQ KLQMQHHPPP LQLSGQNHPF  480
TLRTTQNVDN PKQQYGVSGT DKQHLNLASD LGTANDGRNP SSSSATTPTH FAGDSQAQDH  540
LPSLSGEMDS QQTIVSDSSS GHQQQQQQQQ QQQQTPQQPL QSPAQLLQSA KQRQQQLQQQ  600
QMLQHQQHMQ LMQQRPQPSN QRPITSPVQH QQRLPFRSPS PVPNVSTVAA TTHGGATYFH  660
GPGQGISSLP HVSQGGPFSG SAGRVEGRIR GQSNVGIVPL GPRFMSDHLR EELRRRHALI  720
HAQLDTDQNI INLPEMVQRF HTLYPLEEVN RDDDSPSCAF GVRSMTFKGI SSSDGIAYAI  780
RRIDSREVVP NPELAASAAE VVERWSPLAR HPHIVSIREC FVSREIEDSA ALFFVHDYYP  840
GSVTLEAMHL HQEQAGGVAP MMISEEQLWS YMVQLAAVLR AVHSAGLFFR PGGLHPSKVI  900
LPTRGRLRVS SAGILDVLNG EATDDPRVFQ REDLAGFGRL ILSLACGSMH NASLDFMAAH  960
YSADLVHVTN ALLASSLDKS DGVGISNIRQ LHHVLTERMF GEIEQLHLQN DELMSEISKE  1020
TENGRLLRIL IKLGMTNELP EDDIESGWSE TGDRYLLKLF RDFVFHQTTE DGNPLIDWGH  1080
VIDSLNKLDA GVPEKMILLS RDERSMLFAS YGDLKRCLEG AYQELVNRGS GDKGRSPMLG  1140
AQSPMVHNPR LKQRQAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4bwp_A	5e-69	705	1131	7	448	PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3
4bwp_B	5e-69	705	1131	7	448	PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN-3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XHW2	0.0	A0A2R6XHW2_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP13361	3	4

Link Out ? help Back to Top
Phytozome	Mapoly0014s0196.1.p