PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Mapoly0012s0202.1.p

Organism

Marchantia polymorpha

Taxonomic ID

3197

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia

Family

bHLH

Protein Properties

Length: 478aa MW: 52500.3 Da PI: 8.3191

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Mapoly0012s0202.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.3e-13	279	329	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h Er+RR+ +N+ f++Lr+llP++ K +K++++ + ++YI+ Lq Mapoly0012s0202.1.p 279 QRESHIWSERQRRKGMNHLFSTLRSLLPQP----TSKTDKSTVVSEIIKYIQGLQ 329 7999***********************9....79***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.06E-13	277	332	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.1E-14	278	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.535	278	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.27E-15	279	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.3E-11	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-10	284	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence Send to blast
MPSHCRSGLG MGPVHLHPFS FARSSMIHHN NFDIHRAYQV DSCTSTFQPV KDDPSPVLAT 60 PLLQQQQQQQ QAHAHAQQHS TSSGAVLNPA NVEEVDVETI LQLGELQDWT WPGSVEAHEA 120 KPSELSLPYP TQSLISSTII HPAAHADMHH DQKGSTSTSS LFGPPAEPSS QSFDLQSWCS 180 GVRSVQSPHI AIPKFLANGG FSTSAEPSPT TDTSPLRLDG RERCSPATTP QHPAHHQQQH 240 QQHQHQQHQQ QRRFAYNSEH TEKALCVQKK WQGKRAVSQR ESHIWSERQR RKGMNHLFST 300 LRSLLPQPTS KTDKSTVVSE IIKYIQGLQV KLDELQKKRA EILRRKSMDV TMVGGLNSPT 360 SGIATSVGVG VAVPLSLVAA ANNECCLQSF VLPNVALHIS GNNAFITMSS PKKRGLFCRI 420 LLIMQSHKLA VLNAHISTSN ATVFHCLHVM TPEPGCDFPK EALQTALQNL TLPDSAL*

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence Send to blast

MPSHCRSGLG MGPVHLHPFS FARSSMIHHN NFDIHRAYQV DSCTSTFQPV KDDPSPVLAT  60
PLLQQQQQQQ QAHAHAQQHS TSSGAVLNPA NVEEVDVETI LQLGELQDWT WPGSVEAHEA  120
KPSELSLPYP TQSLISSTII HPAAHADMHH DQKGSTSTSS LFGPPAEPSS QSFDLQSWCS  180
GVRSVQSPHI AIPKFLANGG FSTSAEPSPT TDTSPLRLDG RERCSPATTP QHPAHHQQQH  240
QQHQHQQHQQ QRRFAYNSEH TEKALCVQKK WQGKRAVSQR ESHIWSERQR RKGMNHLFST  300
LRSLLPQPTS KTDKSTVVSE IIKYIQGLQV KLDELQKKRA EILRRKSMDV TMVGGLNSPT  360
SGIATSVGVG VAVPLSLVAA ANNECCLQSF VLPNVALHIS GNNAFITMSS PKKRGLFCRI  420
LLIMQSHKLA VLNAHISTSN ATVFHCLHVM TPEPGCDFPK EALQTALQNL TLPDSAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6XJJ4	0.0	A0A2R6XJJ4_MARPO; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1226	15	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	7e-17	bHLH family protein

Link Out ? help Back to Top
Phytozome	Mapoly0012s0202.1.p