PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0009s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | AP2 | ||||||||
Protein Properties | Length: 420aa MW: 45524.1 Da PI: 5.7614 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.4e-16 | 105 | 156 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Mapoly0009s0013.1.p 105 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDMAAIEYRG 156 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.418 | 1 | 47 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.2E-4 | 1 | 53 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-9 | 13 | 49 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-9 | 15 | 48 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-12 | 105 | 156 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.48E-16 | 105 | 166 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-17 | 105 | 166 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 106 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.413 | 106 | 164 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-24 | 106 | 170 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MRLASSPLHR PVRPVYLGAY DEEEAAARAY DLAALKYWGP GTLINFPVST FETEAIRTSF 60 VICLVRCGKL VSDYARDIEE MQNVTREEYL ASLRRKSSGF SRGVSKYRGV ARHHHNGRWE 120 ARIGRVFGNK YLYLGTYSTQ EEAAAAYDMA AIEYRGLNAV TNFDLSRYIR WLRPGQGNSA 180 LQEPESNLSP VPGDESQLLV DEQCQAAAAA AAAAAAAAGV GEEPHPPVWP AQSTEPYQLP 240 ALGLASNGSQ QQQQQQRSSS SPTALSLLLQ SSMFKQMLER ASSASGPTDC DSTTPSSDLG 300 MDPSGAPQQL QQQHPSSHFF STHQAPPLVE DDSSEHQDVS SYLFSNPTSS SNHHHHHHHL 360 SMYGDHLTPQ DHLSPYSSFP PGVSSSLPTD SEGVAASLDD GSAYWSFGGA LPLNPITSC* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6XLC5 | 0.0 | A0A2R6XLC5_MARPO; Uncharacterized protein | ||||
STRING | GLYMA18G49101.1 | 1e-87 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.2 | 7e-54 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0009s0013.1.p |