PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Mapoly0003s0271.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | GRAS | ||||||||
Protein Properties | Length: 679aa MW: 74345.1 Da PI: 5.7213 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 415.7 | 4.2e-127 | 298 | 678 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 lv+lL++cA+a+++gd + a+a++ ++++ +p++ pm ++aa+f+eAL +r+++ +++ +a+ +s++ a ++ f++ Mapoly0003s0271.1.p 298 LVHLLMACAKAIQAGDRHSAEATVRKIKQAvsMAPQQsaGPMIKVAAHFAEALTRRIYGVSPNFQEAMLSSAS-------MKADFENFYD 380 68***************************94422333246*******************55555544444433.......3444577*** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 +sP+l+f+h+ +NqaIlea+ g+++vH+iDf +++GlQWp+L+qaLa Rp+gpp+l++Tg+g+pe g +++l+ +g+ La +A el+v+f Mapoly0003s0271.1.p 381 LSPYLRFAHFSTNQAILEAFTGANHVHVIDFHLNYGLQWPCLMQALAMRPGGPPTLKLTGIGPPELGGEDSLQDIGRSLATMAGELNVNF 470 ****************************************************************************************** PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +f+ +va+rl+d+++++L+v+pgE++aVn+++qlh+ll+ ++s e devL++vksl+Pkvv+++eqea+hn ++Fl+rf+eal++ys+ Mapoly0003s0271.1.p 471 KFRGVVAERLDDIQPWMLQVQPGEVVAVNSIFQLHKLLHAEGSNEAGLDEVLRAVKSLNPKVVTIAEQEANHNIHNFLDRFVEALHFYSS 560 ****************************************************************************************** PP GRAS 267 lfdsleak..........lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 +fdslea+ +++ +e+ k +++lgrei+n+vacega+r+erhe+le W+ rl++aG++++++ ++a+++a+lll+ +++ Mapoly0003s0271.1.p 561 MFDSLEASkrptdssdprTAHQRQEMYKGAERYLGREICNIVACEGAKRVERHENLEMWKLRLRNAGYQQLRMPSTAYNTASLLLNLYSG 650 *****8887888888665555557788888999********************************************************* PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 +gyrve++ g+++l+W ++pL+++SaW+ Mapoly0003s0271.1.p 651 QGYRVEDNCGCITLCWDGKPLLTASAWQ 678 ***************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.054 | 272 | 658 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-124 | 298 | 678 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MNYGGAPDFQ LASFLDGLDA MMISMDQGGG NQQSSSPSPY ANAGVSYGQS PSPVSQSSFV 60 DVSSVQSPPD SVYNDTLDSE IAQSDMSALT QNFVVNEPWF DDSGNLVSFP ISSDAPSKNS 120 AIGRSPAPAG LDQSYTQDLF EQQFCHEEED MRPQFPSHSF GSAYGFNNTP FSLLKGTDTA 180 SSVGSCGNGS SGSSLSRGRS VGSVSSPRSF GVAPQRMLLP PLRSNSSTRI QAYPNSIFQQ 240 EPGVMKWSAQ PAQASAPQQQ QQQQQQQRQQ QQQQQQQQAL RRPALPVEPE QEDSGLRLVH 300 LLMACAKAIQ AGDRHSAEAT VRKIKQAVSM APQQSAGPMI KVAAHFAEAL TRRIYGVSPN 360 FQEAMLSSAS MKADFENFYD LSPYLRFAHF STNQAILEAF TGANHVHVID FHLNYGLQWP 420 CLMQALAMRP GGPPTLKLTG IGPPELGGED SLQDIGRSLA TMAGELNVNF KFRGVVAERL 480 DDIQPWMLQV QPGEVVAVNS IFQLHKLLHA EGSNEAGLDE VLRAVKSLNP KVVTIAEQEA 540 NHNIHNFLDR FVEALHFYSS MFDSLEASKR PTDSSDPRTA HQRQEMYKGA ERYLGREICN 600 IVACEGAKRV ERHENLEMWK LRLRNAGYQQ LRMPSTAYNT ASLLLNLYSG QGYRVEDNCG 660 CITLCWDGKP LLTASAWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-58 | 290 | 677 | 11 | 378 | Protein SCARECROW |
5b3h_A | 1e-58 | 290 | 677 | 10 | 377 | Protein SCARECROW |
5b3h_D | 1e-58 | 290 | 677 | 10 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024361039.1 | 1e-146 | DELLA protein GAI-like | ||||
TrEMBL | A0A2R6XTJ2 | 0.0 | A0A2R6XTJ2_MARPO; Uncharacterized protein | ||||
STRING | PP1S12_244V6.1 | 1e-143 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1251 | 15 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-120 | RGA-like 2 |
Link Out ? help Back to Top | |
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Phytozome | Mapoly0003s0271.1.p |