PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.S051400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | MYB | ||||||||
Protein Properties | Length: 523aa MW: 57463.4 Da PI: 4.7886 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.3 | 1.3e-16 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed l+d+vk++G g+W+++ + g+ R++k+c++rw ++l Manes.S051400.1.p 25 KGPWTATEDAVLIDYVKKHGEGNWNSVQKNSGLMRCGKSCRLRWANHL 72 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++ Manes.S051400.1.p 78 KGSFTPEEERIIIELHAKLGNK-WARMASQLP-GRTDNEIKNFWNT 121 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.987 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-30 | 22 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-24 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.42E-11 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 25.912 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-16 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 80 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.41E-12 | 80 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 523 aa Download sequence Send to blast |
MISNGGAAKE TGLSGQKATN QSLKKGPWTA TEDAVLIDYV KKHGEGNWNS VQKNSGLMRC 60 GKSCRLRWAN HLRPNLKKGS FTPEEERIII ELHAKLGNKW ARMASQLPGR TDNEIKNFWN 120 TRMKRRQRAG LPIYPQEFQE ETIPFHIKNQ IQHQHQEQNH PNVTNPSSSS FSSLFPSPRK 180 ASYNPSLTLL DPINFSPALD PLNNNLTRSF YSNPAVQFKS FPDNNASNCG LALPLSSYGR 240 SPSSITGFNQ NFPAQSIPMT PPSLHYSTSD FETNMSFTSL IMGAQVEPNE LFPGLGSEIP 300 SDQTPPRPNT PFSSNTSGGV CVREESSKNT DNDSETVVPE MMHDNRNSGL LDALLLESQN 360 LSRKEGKLTG ENSLVATDQK GKRVVDESAE EEEETEKEAA KRVKLSAMNG SENSGENNCC 420 DDLSSSQSSI GVKPNEEPMD EMNSMDDDLL SLLDNFPTTT PLPEWYRSRN IASGLSSSTV 480 VEGGEVEAEQ EASLAGGETT DETPNVDWAF GSSYWNNMPG IC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-32 | 16 | 126 | 18 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.S051400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021602597.1 | 0.0 | transcription factor MYB101-like | ||||
TrEMBL | A0A199UBL7 | 0.0 | A0A199UBL7_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_029822m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9949 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 8e-81 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Manes.S051400.1.p |