PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.18G035400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | Dof | ||||||||
Protein Properties | Length: 239aa MW: 25527.4 Da PI: 7.388 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.6 | 3.1e-39 | 25 | 83 | 4 | 62 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + l+cprC+stntkfCyynny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rkn k+s Manes.18G035400.1.p 25 EPLPCPRCQSTNTKFCYYNNYNLSQPRHFCKSCRRYWTHGGTLRNVPVGGGTRKNSKRS 83 6789***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.2E-33 | 26 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.59 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-20 | 31 | 74 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPSESTSEMR HQTNLGSLPP PKLAEPLPCP RCQSTNTKFC YYNNYNLSQP RHFCKSCRRY 60 WTHGGTLRNV PVGGGTRKNS KRSRSSSSSN SSSSTNTSTS TVSAVIHEPE PLSVLANLDS 120 ALPLLKVETS DNLKLNENFP VNENENFISL LNSQQGQGFM GMVGYGPGYG YGLYELGHGA 180 FGVKGSWPLP GVGYMNGDGS SGCDTWPVGD VEGGGGLVDE DCFSWPGLAI STAGKIFK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.18G035400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021601650.1 | 1e-176 | dof zinc finger protein DOF1.6 | ||||
TrEMBL | A0A2C9U0G9 | 1e-174 | A0A2C9U0G9_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023770m | 1e-175 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 8e-27 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.18G035400.1.p |