PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.17G092400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 520aa MW: 56889.9 Da PI: 6.7029

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.17G092400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6.2e-05	415	447	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++ L++++ + +K + a++L +A++YIk Lq Manes.17G092400.1.p 415 DRISALQQIVSPF-----GKTDTASVLLEAIQYIKFLQ 447 7899999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.34	397	446	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-10	412	463	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-9	412	455	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.03E-5	415	451	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence Send to blast
MAQECCESSV AISSCTPSSA AAAGWWDVHH ACSLSSWTNN SSCSPWHQQQ PNPSSNSSCE 60 EDVSISTSFT NASNHSGLTV ESSRRLVEPA ASSPSEFMAE HASDSQLWSH ILFGVGSNNG 120 DLHNIQDVGE NLLDALSSKS ISTGIFEPAC DYLKKMENNN WEFTNSPSFN TFEHKHVNGF 180 STDHLSSIES ERVTKLSNLV NNWTIAPPDP GVAVSHETID PIACNISLGS TVNHYSQPQT 240 YSDSASCGTE ILNTKSGFLS CYDGHDIKLE DERRHVESPG YIFRRSFNNC NGVGYDIGLS 300 SGSVVADNSK YYYGVPNNTC ASARNFTDVA FNGRFNKPMI DIQGNTPCFK SLNSSDCRKQ 360 RGQTSLPQGR GKGSTSETKK KRSFDTSPAV LKKPKHESST VSSAKMQVPK VKLGDRISAL 420 QQIVSPFGKT DTASVLLEAI QYIKFLQEQV QLLSNPYMKN NSHKDPWGGL EKKDKGDLKL 480 DLRSRGLSLV PISCTPQVYQ ENTGSDYWTP TYRSGCLYR*

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence Send to blast

MAQECCESSV AISSCTPSSA AAAGWWDVHH ACSLSSWTNN SSCSPWHQQQ PNPSSNSSCE  60
EDVSISTSFT NASNHSGLTV ESSRRLVEPA ASSPSEFMAE HASDSQLWSH ILFGVGSNNG  120
DLHNIQDVGE NLLDALSSKS ISTGIFEPAC DYLKKMENNN WEFTNSPSFN TFEHKHVNGF  180
STDHLSSIES ERVTKLSNLV NNWTIAPPDP GVAVSHETID PIACNISLGS TVNHYSQPQT  240
YSDSASCGTE ILNTKSGFLS CYDGHDIKLE DERRHVESPG YIFRRSFNNC NGVGYDIGLS  300
SGSVVADNSK YYYGVPNNTC ASARNFTDVA FNGRFNKPMI DIQGNTPCFK SLNSSDCRKQ  360
RGQTSLPQGR GKGSTSETKK KRSFDTSPAV LKKPKHESST VSSAKMQVPK VKLGDRISAL  420
QQIVSPFGKT DTASVLLEAI QYIKFLQEQV QLLSNPYMKN NSHKDPWGGL EKKDKGDLKL  480
DLRSRGLSLV PISCTPQVYQ ENTGSDYWTP TYRSGCLYR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.17G092400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021598701.1	0.0	uncharacterized protein LOC110604730 isoform X1
TrEMBL	A0A2C9U6F7	0.0	A0A2C9U6F7_MANES; Uncharacterized protein
STRING	cassava4.1_007109m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10116	26	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	4e-60	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.17G092400.1.p